RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 DUSP6Q16828 381 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 ANO6Q4KMQ2 910 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 KIAA1755Q5JYT7 1200 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 TEX35Q5T0J7 233 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 ZNF618Q5T7W0 954 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 STPG1Q5TH74 334 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 CCDC30Q5VVM6 783 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 GDF6Q6KF10 455 aaPredicted RBP4.72□□□□□ -1.65
LIG3-211ENST00000588713 CTR9Q6PD62 1173 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 TTC6Q86TZ1 520 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 GPIHBP1Q8IV16 184 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 ANKRD35Q8N283 1001 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 MAGEB6Q8N7X4 407 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 KLHL23Q8NBE8 558 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 TGFBRAP1Q8WUH2 860 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 RUFY2Q8WXA3 655 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 CRELD1Q96HD1 420 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 FGD4Q96M96 766 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 PLVAPQ9BX97 442 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 YY1AP1Q9H869 796 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 FBXO28Q9NVF7 368 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 IMPACTQ9P2X3 320 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 WNT16Q9UBV4 365 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 MYO10Q9HD67 2058 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 MICAL3Q7RTP6 2002 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 TICRRQ7Z2Z1 1910 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 FLT1P17948 1338 aa4.72□□□□□ -1.65
LIG3-211ENST00000588713 LOC101059915A0A1B0GWI6 518 aaPredicted RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 A0A1W2PRG0 241 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 VPS37CA5D8V6 355 aaPredicted RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 GOLGA6L19H0YKK7 550 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 J3QL48 77 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 HIP1O00291 1037 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 VWA5AO00534 786 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 MPHOSPH10O00566 681 aaKnown RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 NRDCO43847 1150 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 RAD21O60216 631 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 TPM1P09493 284 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 FGFR2P21802 821 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 PHKA1P46020 1223 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 CCR10P46092 362 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 CPT1AP50416 773 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 LIMK1P53667 647 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 CCZ1BP86790 482 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 CCZ1P86791 482 aaPredicted RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 ATP8B2P98198 1209 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 PTPN11Q06124 597 aaPredicted RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 RAD51AP2Q09MP3 1159 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 ST3GAL1Q11201 340 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 LRMPQ12912 555 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 SEPT2Q15019 361 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 ANKRD1Q15327 319 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 PTPN14Q15678 1187 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 ELF2Q15723 593 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 CERKLQ49MI3 558 aaPredicted RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 HSP90AB4PQ58FF6 505 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 RARS2Q5T160 578 aaKnown RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 PLPP4Q5VZY2 271 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 XRRA1Q6P2D8 792 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 SLC4A10Q6U841 1118 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 G2E3Q7L622 706 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 FILIP1Q7Z7B0 1213 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 LUZP1Q86V48 1076 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 DRC7Q8IY82 874 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 CCAR2Q8N163 923 aaKnown RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 ZNF843Q8N446 348 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 PJA1Q8NG27 643 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 OR6J1Q8NGC5 347 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 KLHDC4Q8TBB5 520 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 PI4K2BQ8TCG2 481 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 SSH3Q8TE77 659 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 CACTINQ8WUQ7 758 aaKnown RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 SEPT8Q92599 483 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 RILPL2Q969X0 211 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 MRGPRX2Q96LB1 330 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 PURBQ96QR8 312 aaKnown RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 CTAGE1Q96RT6 745 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 UBL7Q96S82 380 aaPredicted RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 CDCA3Q99618 268 aaPredicted RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 USB1Q9BQ65 265 aaKnown RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 NOL10Q9BSC4 688 aaKnown RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 MYL10Q9BUA6 226 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 SRRTQ9BXP5 876 aaKnown RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 BCO2Q9BYV7 579 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 TRIM5Q9C035 493 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 KCNK12Q9HB15 430 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 ARHGEF3Q9NR81 526 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 SNRKQ9NRH2 765 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 AATFQ9NY61 560 aaKnown RBP eCLIP4.71□□□□□ -1.66
LIG3-211ENST00000588713 CWC15Q9P013 229 aaKnown RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 ZKSCAN7Q9P0L1 754 aaPredicted RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 KLK13Q9UKR3 277 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 ZNF215Q9UL58 517 aaPredicted RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 ZNF214Q9UL59 606 aaPredicted RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 EXOC6BQ9Y2D4 811 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 RIPK3Q9Y572 518 aa4.71□□□□□ -1.66
LIG3-211ENST00000588713 V9GYY5 206 aaPredicted RBP4.71□□□□□ -1.66
LIG3-211ENST00000588713 PIEZO2Q9H5I5 2752 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 DOPEY1Q5JWR5 2465 aa4.7□□□□□ -1.66
LIG3-211ENST00000588713 MYH7P12883 1935 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms