RNA–Protein interactions for RNA: ENST00000587988.5

SMARCA4-213, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 2

Gene SMARCA4, Length 552 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-213ENST00000587988 TLR3O15455 904 aaKnown RBP11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 MAGEB2O15479 319 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 USO1O60763 962 aaKnown RBP11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 SSBP05455 408 aaKnown RBP eCLIP11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 STAT6P42226 847 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 CLCN3P51790 818 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 PTK7Q13308 1070 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 EMC2Q15006 297 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 TRIM71Q2Q1W2 868 aaKnown RBP11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 RINT1Q6NUQ1 792 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 PADI6Q6TGC4 694 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 CCDC73Q6ZRK6 1079 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 MAEAQ7L5Y9 396 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 KIAA0319LQ8IZA0 1049 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 KCTD17Q8N5Z5 321 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 METTL13Q8N6R0 699 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 DNAJB3Q8WWF6 145 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 LARP4BQ92615 738 aaKnown RBP11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 CCDC43Q96MW1 224 aaKnown RBP11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 GBP4Q96PP9 640 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 HTATIP2Q9BUP3 242 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 RUSC1Q9BVN2 902 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 FAM49AQ9H0Q0 323 aaPredicted RBP11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 SUGCTQ9HAC7 445 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 STK17AQ9UEE5 414 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 NOD1Q9Y239 953 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 LOXHD1Q8IVV2 1947 aa11.92□□□□□ -0.5
SMARCA4-213ENST00000587988 NPHP3-ACAD11A0A0J9YXS1 232 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 SMIM35A0A1B0GVV1 85 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 TRIM43BA6NCK2 446 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 DGAT1O75907 488 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 CLTBP09497 229 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 LIG1P18858 919 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 ITGB8P26012 769 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 RFC5P40937 340 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 SYKP43405 635 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 RGS19P49795 217 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 POLGP54098 1239 aaPredicted RBP11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 TMEM62Q0P6H9 643 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 LONRF3Q496Y0 759 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 ARSHQ5FYA8 562 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 C1orf186Q6ZWK4 172 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 C7orf61Q8IZ16 206 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 STAMQ92783 540 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 DPF3Q92784 378 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 TMEM143Q96AN5 459 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 TRIM43Q96BQ3 446 aaPredicted RBP11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 MTRQ99707 1265 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 ATP6V0A4Q9HBG4 840 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 GPRC5CQ9NQ84 441 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 LMBRD1Q9NUN5 540 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 TMEM39AQ9NV64 488 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 SERTAD1Q9UHV2 236 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 TBX21Q9UL17 535 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 PPME1Q9Y570 386 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 DNAH12Q6ZR08 3092 aa11.91□□□□□ -0.5
SMARCA4-213ENST00000587988 UMODL1Q5DID0 1318 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 ACTN4O43707 911 aaKnown RBP11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 EVI5O60447 810 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 ZNF202O95125 648 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 VTNP04004 478 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 CKBP12277 381 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 CYP11B2P19099 503 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 THPOP40225 353 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 CACNB1Q02641 598 aaPredicted RBP11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 RAD51AP2Q09MP3 1159 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 SNW1Q13573 536 aaKnown RBP11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 ZNF618Q5T7W0 954 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 TAF2Q6P1X5 1199 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 GPBP1Q86WP2 473 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 KSR1Q8IVT5 923 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 FMR1NBQ8N0W7 255 aaPredicted RBP11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 IQUBQ8NA54 791 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 RETREG2Q8NC44 543 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 ENGASEQ8NFI3 743 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 SLC7A3Q8WY07 619 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 ZNF668Q96K58 619 aaPredicted RBP11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 PPP1R16BQ96T49 567 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 NOC4LQ9BVI4 516 aaKnown RBP11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 OSBPL7Q9BZF2 842 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 PPP1R12CQ9BZL4 782 aa11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 PRDM5Q9NQX1 630 aaPredicted RBP11.9□□□□□ -0.5
SMARCA4-213ENST00000587988 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 MYMKA6NI61 221 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 KIAA0355O15063 1070 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 NR1I2O75469 434 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 CHRNA1P02708 482 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 CTSHP09668 335 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 SYN1P17600 705 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 CYP2C18P33260 490 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 ARL2P36404 184 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 UBE2HP62256 183 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 FAM102BQ5T8I3 360 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 TRAF7Q6Q0C0 670 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 SV2BQ7L1I2 683 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 RPAINQ86UA6 219 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 EXOC8Q8IYI6 725 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 GRAMD1CQ8IYS0 662 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 DAW1Q8N136 415 aa11.89□□□□□ -0.51
SMARCA4-213ENST00000587988 ASAP3Q8TDY4 903 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms