RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 RNF135Q8IUD6 432 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 LINC01465Q8N7H1 131 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 FAM167AQ96KS9 214 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 UIMC1Q96RL1 719 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 CDCA3Q99618 268 aaPredicted RBP13.46□□□□□ -0.25
LIG3-209ENST00000586435 OSMRQ99650 979 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 TLR9Q9NR96 1032 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 TCEAL9Q9UHQ7 104 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 PCDHA10Q9Y5I2 948 aa13.46□□□□□ -0.25
LIG3-209ENST00000586435 TBKBP1A7MCY6 615 aa13.45□□□□□ -0.26
LIG3-209ENST00000586435 LOC730098B7Z3J9 87 aa13.45□□□□□ -0.26
LIG3-209ENST00000586435 MAGEB2O15479 319 aa13.45□□□□□ -0.26
LIG3-209ENST00000586435 PRPF3O43395 683 aaKnown RBP13.45□□□□□ -0.26
LIG3-209ENST00000586435 FGF18O76093 207 aa13.45□□□□□ -0.26
LIG3-209ENST00000586435 DSC3Q14574 896 aa13.45□□□□□ -0.26
LIG3-209ENST00000586435 CBX2Q14781 532 aaPredicted RBP13.45□□□□□ -0.26
LIG3-209ENST00000586435 KIZQ2M2Z5 673 aa13.45□□□□□ -0.26
LIG3-209ENST00000586435 FAM102BQ5T8I3 360 aa13.45□□□□□ -0.26
LIG3-209ENST00000586435 CKAP2LQ8IYA6 745 aa13.45□□□□□ -0.26
LIG3-209ENST00000586435 COLGALT1Q8NBJ5 622 aa13.45□□□□□ -0.26
LIG3-209ENST00000586435 CCDC148Q8NFR7 591 aa13.45□□□□□ -0.26
LIG3-209ENST00000586435 AGXT2Q9BYV1 514 aa13.45□□□□□ -0.26
LIG3-209ENST00000586435 ATP6V0A4Q9HBG4 840 aa13.45□□□□□ -0.26
LIG3-209ENST00000586435 MUTYHQ9UIF7 546 aa13.45□□□□□ -0.26
LIG3-209ENST00000586435 LZTS1Q9Y250 596 aa13.45□□□□□ -0.26
LIG3-209ENST00000586435 FSCN2O14926 492 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 ADAMTS3O15072 1205 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 HOXA2O43364 376 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 VTNP04004 478 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 ATF7P17544 494 aaPredicted RBP13.44□□□□□ -0.26
LIG3-209ENST00000586435 LAG3P18627 525 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 FGD1P98174 961 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 PLCB3Q01970 1234 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 APOBRQ0VD83 1088 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 PRR16Q569H4 304 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 SPOUT1Q5T280 376 aaKnown RBP13.44□□□□□ -0.26
LIG3-209ENST00000586435 Q6ZUG5 572 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 HFE2Q6ZVN8 426 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 BMP8AQ7Z5Y6 402 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 THNSL1Q8IYQ7 743 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 METTL13Q8N6R0 699 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 BICD2Q8TD16 824 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 EDAQ92838 391 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 LENG9Q96B70 501 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 MAP7D2Q96T17 732 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 RNF26Q9BY78 433 aaPredicted RBP13.44□□□□□ -0.26
LIG3-209ENST00000586435 TMEM117Q9H0C3 514 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 CWH43Q9H720 699 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 TLE6Q9H808 572 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 TYW1Q9NV66 732 aaKnown RBP13.44□□□□□ -0.26
LIG3-209ENST00000586435 GABBR1Q9UBS5 961 aa13.44□□□□□ -0.26
LIG3-209ENST00000586435 NAP1L2Q9ULW6 460 aaPredicted RBP13.44□□□□□ -0.26
LIG3-209ENST00000586435 BARX2Q9UMQ3 279 aaPredicted RBP13.44□□□□□ -0.26
LIG3-209ENST00000586435 USP15Q9Y4E8 981 aaPredicted RBP13.44□□□□□ -0.26
LIG3-209ENST00000586435 WDR64B1ANS9 1081 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 FGFR1P11362 822 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 TMOD1P28289 359 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 HSPA4P34932 840 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 KCNC3Q14003 757 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 NTRK3Q16288 839 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 DUSP6Q16828 381 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 TMEM184AQ6ZMB5 413 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 RBM23Q86U06 439 aaKnown RBP13.43□□□□□ -0.26
LIG3-209ENST00000586435 KMT2EQ8IZD2 1858 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 RASGRP4Q8TDF6 673 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 SUSD6Q92537 303 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 BRF1Q92994 677 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 MFSD14AQ96MC6 490 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 FBXL18Q96ME1 805 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 PPP1R16BQ96T49 567 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 PHF7Q9BWX1 381 aaPredicted RBP13.43□□□□□ -0.26
LIG3-209ENST00000586435 ADAMTS10Q9H324 1103 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 PCDHGC5Q9Y5F6 944 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 ZDBF2Q9HCK1 2354 aa13.43□□□□□ -0.26
LIG3-209ENST00000586435 ZNF862O60290 1169 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 PPFIA3O75145 1194 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 OATP04181 439 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 SRGAP2BP0DMP2 458 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 CPA1P15085 419 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 IFNAR1P17181 557 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 IBSPP21815 317 aaPredicted RBP13.42□□□□□ -0.26
LIG3-209ENST00000586435 EIF4BP23588 611 aaKnown RBP13.42□□□□□ -0.26
LIG3-209ENST00000586435 PPM1AP35813 382 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 CLCN3P51790 818 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 NLRP11P59045 1033 aaKnown RBP13.42□□□□□ -0.26
LIG3-209ENST00000586435 ERVFC1P60507 584 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 AKAP17AQ02040 695 aaKnown RBP13.42□□□□□ -0.26
LIG3-209ENST00000586435 NHLH1Q02575 133 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 EFCAB12Q6NXP0 572 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 BLOC1S2Q6QNY1 142 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 SKAP1Q86WV1 359 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 LRRC43Q8N309 656 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 VN1R2Q8NFZ6 395 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 MICAL1Q8TDZ2 1067 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 MRPS27Q92552 414 aaKnown RBP13.42□□□□□ -0.26
LIG3-209ENST00000586435 JAKMIP1Q96N16 626 aaKnown RBP13.42□□□□□ -0.26
LIG3-209ENST00000586435 RIT2Q99578 217 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 DISC1Q9NRI5 854 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 RNF19AQ9NV58 838 aa13.42□□□□□ -0.26
LIG3-209ENST00000586435 HCSTQ9UBK5 93 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms