RNA–Protein interactions for RNA: ENST00000585466.1

CLIP3-202, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 2

Gene CLIP3, Length 368 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-202ENST00000585466 GUCY1B3Q02153 619 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 RABEP1Q15276 862 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 XKR3Q5GH77 459 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 EFCAB12Q6NXP0 572 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 FAM228AQ86W67 206 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 GDPD5Q8WTR4 605 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 ZNF689Q96CS4 500 aaPredicted RBP17.06■□□□□ 0.32
CLIP3-202ENST00000585466 TGS1Q96RS0 853 aaKnown RBP17.06■□□□□ 0.32
CLIP3-202ENST00000585466 PPP1R16BQ96T49 567 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 OSMRQ99650 979 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 NAP1L4Q99733 375 aaKnown RBP17.06■□□□□ 0.32
CLIP3-202ENST00000585466 C17orf80Q9BSJ5 609 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 BRMS1Q9HCU9 246 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 NRBP2Q9NSY0 501 aa17.06■□□□□ 0.32
CLIP3-202ENST00000585466 CRYBB1P53674 252 aaPredicted RBP17.05■□□□□ 0.32
CLIP3-202ENST00000585466 PSMC5P62195 406 aa17.05■□□□□ 0.32
CLIP3-202ENST00000585466 PAK2Q13177 524 aa17.05■□□□□ 0.32
CLIP3-202ENST00000585466 METTL13Q8N6R0 699 aa17.05■□□□□ 0.32
CLIP3-202ENST00000585466 ZNF579Q8NAF0 562 aaKnown RBP17.05■□□□□ 0.32
CLIP3-202ENST00000585466 FBXO18Q8NFZ0 1043 aa17.05■□□□□ 0.32
CLIP3-202ENST00000585466 MTMR9Q96QG7 549 aa17.05■□□□□ 0.32
CLIP3-202ENST00000585466 SH2D3AQ9BRG2 576 aa17.05■□□□□ 0.32
CLIP3-202ENST00000585466 FTHL17Q9BXU8 183 aa17.05■□□□□ 0.32
CLIP3-202ENST00000585466 MTUS1Q9ULD2 1270 aa17.05■□□□□ 0.32
CLIP3-202ENST00000585466 MYO7AQ13402 2215 aa17.05■□□□□ 0.32
CLIP3-202ENST00000585466 FNDC1Q4ZHG4 1894 aaPredicted RBP17.05■□□□□ 0.32
CLIP3-202ENST00000585466 DGKIO75912 1065 aa17.04■□□□□ 0.32
CLIP3-202ENST00000585466 DSC3Q14574 896 aa17.04■□□□□ 0.32
CLIP3-202ENST00000585466 EPHA7Q15375 998 aa17.04■□□□□ 0.32
CLIP3-202ENST00000585466 C8orf76Q96K31 380 aa17.04■□□□□ 0.32
CLIP3-202ENST00000585466 TBC1D32Q96NH3 1257 aa17.04■□□□□ 0.32
CLIP3-202ENST00000585466 YME1L1Q96TA2 773 aa17.04■□□□□ 0.32
CLIP3-202ENST00000585466 TMEM60Q9H2L4 133 aa17.04■□□□□ 0.32
CLIP3-202ENST00000585466 RGL1Q9NZL6 768 aa17.04■□□□□ 0.32
CLIP3-202ENST00000585466 SEPT9Q9UHD8 586 aaPredicted RBP17.04■□□□□ 0.32
CLIP3-202ENST00000585466 ST3GAL5Q9UNP4 418 aa17.04■□□□□ 0.32
CLIP3-202ENST00000585466 GINS2Q9Y248 185 aa17.04■□□□□ 0.32
CLIP3-202ENST00000585466 ADGRA3Q8IWK6 1321 aa17.03■□□□□ 0.32
CLIP3-202ENST00000585466 XIRP2A4UGR9 3374 aa17.03■□□□□ 0.32
CLIP3-202ENST00000585466 RPS6KA5O75582 802 aa17.03■□□□□ 0.32
CLIP3-202ENST00000585466 P4HBP07237 508 aaKnown RBP17.03■□□□□ 0.32
CLIP3-202ENST00000585466 QARSP47897 775 aaKnown RBP17.03■□□□□ 0.32
CLIP3-202ENST00000585466 GPC3P51654 580 aa17.03■□□□□ 0.32
CLIP3-202ENST00000585466 NLRP11P59045 1033 aaKnown RBP17.03■□□□□ 0.32
CLIP3-202ENST00000585466 HMGN5P82970 282 aaKnown RBP17.03■□□□□ 0.32
CLIP3-202ENST00000585466 TBC1D8BQ0IIM8 1120 aa17.03■□□□□ 0.32
CLIP3-202ENST00000585466 CCDC85BQ15834 202 aaPredicted RBP17.03■□□□□ 0.32
CLIP3-202ENST00000585466 MTERF2Q49AM1 385 aa17.03■□□□□ 0.32
CLIP3-202ENST00000585466 PLA2G4FQ68DD2 849 aa17.03■□□□□ 0.32
CLIP3-202ENST00000585466 SLFN12Q8IYM2 578 aa17.03■□□□□ 0.32
CLIP3-202ENST00000585466 PPM1EQ8WY54 764 aa17.03■□□□□ 0.32
CLIP3-202ENST00000585466 LXNQ9BS40 222 aa17.03■□□□□ 0.32
CLIP3-202ENST00000585466 C9IYK1 514 aa17.02■□□□□ 0.32
CLIP3-202ENST00000585466 NEMFO60524 1076 aa17.02■□□□□ 0.32
CLIP3-202ENST00000585466 MAFO75444 373 aaPredicted RBP17.02■□□□□ 0.32
CLIP3-202ENST00000585466 NPEPPSP55786 919 aa17.02■□□□□ 0.32
CLIP3-202ENST00000585466 TRIM29Q14134 588 aa17.02■□□□□ 0.32
CLIP3-202ENST00000585466 EPC2Q52LR7 807 aa17.02■□□□□ 0.32
CLIP3-202ENST00000585466 NPAS4Q8IUM7 802 aa17.02■□□□□ 0.32
CLIP3-202ENST00000585466 C4orf19Q8IY42 314 aa17.02■□□□□ 0.32
CLIP3-202ENST00000585466 CLP1Q92989 425 aaKnown RBP17.02■□□□□ 0.32
CLIP3-202ENST00000585466 DYDC2Q96IM9 177 aa17.02■□□□□ 0.32
CLIP3-202ENST00000585466 ZNF668Q96K58 619 aaPredicted RBP17.02■□□□□ 0.32
CLIP3-202ENST00000585466 MAP7D2Q96T17 732 aa17.02■□□□□ 0.32
CLIP3-202ENST00000585466 HSD17B14Q9BPX1 270 aa17.02■□□□□ 0.32
CLIP3-202ENST00000585466 FOXP1Q9H334 677 aaPredicted RBP17.02■□□□□ 0.32
CLIP3-202ENST00000585466 RGS18Q9NS28 235 aa17.02■□□□□ 0.32
CLIP3-202ENST00000585466 AKT3Q9Y243 479 aa17.02■□□□□ 0.32
CLIP3-202ENST00000585466 DDX11L8A8MPP1 907 aa17.01■□□□□ 0.31
CLIP3-202ENST00000585466 ZBTB39O15060 712 aa17.01■□□□□ 0.31
CLIP3-202ENST00000585466 SLITRK3O94933 977 aa17.01■□□□□ 0.31
CLIP3-202ENST00000585466 GATMP50440 423 aa17.01■□□□□ 0.31
CLIP3-202ENST00000585466 NFX1Q12986 1120 aaKnown RBP17.01■□□□□ 0.31
CLIP3-202ENST00000585466 CALCRLQ16602 461 aa17.01■□□□□ 0.31
CLIP3-202ENST00000585466 NCAPH2Q6IBW4 605 aa17.01■□□□□ 0.31
CLIP3-202ENST00000585466 FAM43BQ6ZT52 329 aaPredicted RBP17.01■□□□□ 0.31
CLIP3-202ENST00000585466 TMEM192Q8IY95 271 aa17.01■□□□□ 0.31
CLIP3-202ENST00000585466 FBXO22Q8NEZ5 403 aa17.01■□□□□ 0.31
CLIP3-202ENST00000585466 TMX3Q96JJ7 454 aa17.01■□□□□ 0.31
CLIP3-202ENST00000585466 ADAM2Q99965 735 aa17.01■□□□□ 0.31
CLIP3-202ENST00000585466 COL25A1Q9BXS0 654 aaPredicted RBP17.01■□□□□ 0.31
CLIP3-202ENST00000585466 DHX33Q9H6R0 707 aaKnown RBP17.01■□□□□ 0.31
CLIP3-202ENST00000585466 CYP26B1Q9NR63 512 aa17.01■□□□□ 0.31
CLIP3-202ENST00000585466 LMCD1Q9NZU5 365 aa17.01■□□□□ 0.31
CLIP3-202ENST00000585466 C5orf67F2Z3F1 127 aa17■□□□□ 0.31
CLIP3-202ENST00000585466 GPR182O15218 404 aa17■□□□□ 0.31
CLIP3-202ENST00000585466 LYPLA2O95372 231 aa17■□□□□ 0.31
CLIP3-202ENST00000585466 DARSP14868 501 aaKnown RBP17■□□□□ 0.31
CLIP3-202ENST00000585466 EIF4BP23588 611 aaKnown RBP17■□□□□ 0.31
CLIP3-202ENST00000585466 TMOD1P28289 359 aa17■□□□□ 0.31
CLIP3-202ENST00000585466 SARSP49591 514 aaKnown RBP17■□□□□ 0.31
CLIP3-202ENST00000585466 FAM189BP81408 668 aa17■□□□□ 0.31
CLIP3-202ENST00000585466 CTTNQ14247 550 aaKnown RBP17■□□□□ 0.31
CLIP3-202ENST00000585466 SAMD11Q96NU1 681 aa17■□□□□ 0.31
CLIP3-202ENST00000585466 TTC12Q9H892 705 aaPredicted RBP17■□□□□ 0.31
CLIP3-202ENST00000585466 H3BNC9 293 aa16.99■□□□□ 0.31
CLIP3-202ENST00000585466 GTPBP6O43824 516 aaPredicted RBP16.99■□□□□ 0.31
CLIP3-202ENST00000585466 U2AF2P26368 475 aaKnown RBP eCLIP16.99■□□□□ 0.31
CLIP3-202ENST00000585466 TOB1P50616 345 aaPredicted RBP16.99■□□□□ 0.31
CLIP3-202ENST00000585466 CYP4A11Q02928 519 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms