RNA–Protein interactions for RNA: ENST00000581039.1

RFFL-208, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 3

Gene RFFL, Length 424 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-208ENST00000581039 FANCBQ8NB91 859 aa11.31□□□□□ -0.6
RFFL-208ENST00000581039 ZNF558Q96NG5 402 aa11.31□□□□□ -0.6
RFFL-208ENST00000581039 NECTIN4Q96NY8 510 aa11.31□□□□□ -0.6
RFFL-208ENST00000581039 PPP1R16BQ96T49 567 aa11.31□□□□□ -0.6
RFFL-208ENST00000581039 OSMRQ99650 979 aa11.31□□□□□ -0.6
RFFL-208ENST00000581039 TMEM117Q9H0C3 514 aa11.31□□□□□ -0.6
RFFL-208ENST00000581039 ZNF302Q9NR11 478 aa11.31□□□□□ -0.6
RFFL-208ENST00000581039 SORCS3Q9UPU3 1222 aa11.31□□□□□ -0.6
RFFL-208ENST00000581039 COL1A2P08123 1366 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 DDX39AO00148 427 aaKnown RBP11.3□□□□□ -0.6
RFFL-208ENST00000581039 MEIS1O00470 390 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 SH2B2O14492 632 aaPredicted RBP11.3□□□□□ -0.6
RFFL-208ENST00000581039 SGSM2O43147 1006 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 CCNE2O96020 404 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 ZSCAN20P17040 1043 aaPredicted RBP11.3□□□□□ -0.6
RFFL-208ENST00000581039 LIFRP42702 1097 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 ITIH3Q06033 890 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 BMS1Q14692 1282 aaKnown RBP11.3□□□□□ -0.6
RFFL-208ENST00000581039 SWSAP1Q6NVH7 229 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 MIS18BP1Q6P0N0 1132 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 PDXDC2PQ6P474 469 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 ABHD15Q6UXT9 468 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 LRRC55Q6ZSA7 311 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 TMTC3Q6ZXV5 915 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 FAM228AQ86W67 206 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 RAB11FIP4Q86YS3 637 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 TEX2Q8IWB9 1127 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 CKAP2LQ8IYA6 745 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 METTL13Q8N6R0 699 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 MRPL43Q8N983 215 aaKnown RBP11.3□□□□□ -0.6
RFFL-208ENST00000581039 PGBD1Q96JS3 809 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 CASD1Q96PB1 797 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 ADAM7Q9H2U9 754 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 RIC8AQ9NPQ8 531 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 SPG21Q9NZD8 308 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 RBM8AQ9Y5S9 174 aaKnown RBP11.3□□□□□ -0.6
RFFL-208ENST00000581039 KIAA1671Q9BY89 1806 aa11.3□□□□□ -0.6
RFFL-208ENST00000581039 PLXNA4Q9HCM2 1894 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 C2CD4DB7Z1M9 353 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 GPR32O75388 356 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 BRD1O95696 1058 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 CA8P35219 290 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 MTHFRP42898 656 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 ADCY7P51828 1080 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 NAPAP54920 295 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 DSC3Q14574 896 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 SMC1AQ14683 1233 aaKnown RBP11.29□□□□□ -0.6
RFFL-208ENST00000581039 SYNE3Q6ZMZ3 975 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 ASCL5Q7RTU5 278 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 TRMT1LQ7Z2T5 733 aaKnown RBP11.29□□□□□ -0.6
RFFL-208ENST00000581039 LRRC43Q8N309 656 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 TMEM87AQ8NBN3 555 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 EXOC6Q8TAG9 804 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 BBXQ8WY36 941 aaPredicted RBP11.29□□□□□ -0.6
RFFL-208ENST00000581039 ANO3Q9BYT9 981 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 MFSD1Q9H3U5 465 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 HCFC2Q9Y5Z7 792 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 KMT2EQ8IZD2 1858 aa11.29□□□□□ -0.6
RFFL-208ENST00000581039 CFAP54Q96N23 3096 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 SMCO2A6NFE2 343 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 C2orf71A6NGG8 1288 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 ZBTB42B2RXF5 422 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 C22orf31O95567 290 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 CXCL14O95715 111 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 VTNP04004 478 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 PBX3P40426 434 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 NBL1P41271 181 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 ATAT1Q5SQI0 421 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 WWC2Q6AWC2 1192 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 ASTLQ6HA08 431 aaPredicted RBP11.28□□□□□ -0.6
RFFL-208ENST00000581039 NIPA1Q7RTP0 329 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 CCDC60Q8IWA6 550 aaPredicted RBP11.28□□□□□ -0.6
RFFL-208ENST00000581039 TMEM105Q8N8V8 129 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 RNF169Q8NCN4 708 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 GLT8D2Q9H1C3 349 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 POMKQ9H5K3 350 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 LIMD1Q9UGP4 676 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 CDH22Q9UJ99 828 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 CEP131Q9UPN4 1083 aa11.28□□□□□ -0.6
RFFL-208ENST00000581039 RIF1Q5UIP0 2472 aaKnown RBP11.28□□□□□ -0.6
RFFL-208ENST00000581039 PRR23AA6NEV1 266 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 IPO5O00410 1097 aaKnown RBP11.27□□□□□ -0.61
RFFL-208ENST00000581039 MAGEB2O15479 319 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 CLASP2O75122 1294 aaKnown RBP11.27□□□□□ -0.61
RFFL-208ENST00000581039 WEE2P0C1S8 567 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 ATP4AP20648 1035 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 TMOD1P28289 359 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 SREBF1P36956 1147 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 ALDH7A1P49419 539 aaKnown RBP11.27□□□□□ -0.61
RFFL-208ENST00000581039 NLRP11P59045 1033 aaKnown RBP11.27□□□□□ -0.61
RFFL-208ENST00000581039 AP3B2Q13367 1082 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 PPP1R18Q6NYC8 613 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 MICU3Q86XE3 530 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 PLA2G4DQ86XP0 818 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 ECHDC2Q86YB7 292 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 ZDHHC14Q8IZN3 488 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 ZNF710Q8N1W2 664 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 PLCD3Q8N3E9 789 aa11.27□□□□□ -0.61
RFFL-208ENST00000581039 NKD2Q969F2 451 aaPredicted RBP11.27□□□□□ -0.61
RFFL-208ENST00000581039 MAP7D2Q96T17 732 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms