RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 FAM13AO94988 1023 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 TBC1D8BQ0IIM8 1120 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 PSMD2Q13200 908 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 MORC3Q14149 939 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 STX1AQ16623 288 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 KIAA0753Q2KHM9 967 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 KMT5BQ4FZB7 885 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 CCSAPQ6IQ19 270 aaPredicted RBP11.91□□□□□ -0.5
SS18-213ENST00000579640 LRSAM1Q6UWE0 723 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 ARMC5Q96C12 935 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 DRC1Q96MC2 740 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 CEP89Q96ST8 783 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 PDLIM7Q9NR12 457 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 PANK4Q9NVE7 773 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 ANO10Q9NW15 660 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 SEL1LQ9UBV2 794 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 KCNG1Q9UIX4 513 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 NRCAMQ92823 1304 aa11.91□□□□□ -0.5
SS18-213ENST00000579640 NPHP3-ACAD11A0A0J9YXS1 232 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 MAFO75444 373 aaPredicted RBP11.9□□□□□ -0.5
SS18-213ENST00000579640 CCL5P13501 91 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 INSRRP14616 1297 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 ZNF131P52739 623 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 RTP1P59025 263 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 NLRP12P59046 1061 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 IRX5P78411 483 aaPredicted RBP11.9□□□□□ -0.5
SS18-213ENST00000579640 TYRO3Q06418 890 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 COASYQ13057 564 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 PPFIA1Q13136 1202 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 EMC2Q15006 297 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 LRRC41Q15345 812 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 KCNA10Q16322 511 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 ZNF658Q5TYW1 1059 aaPredicted RBP11.9□□□□□ -0.5
SS18-213ENST00000579640 KIFAP3Q92845 792 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 SH2D3AQ9BRG2 576 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 FUCA2Q9BTY2 467 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 C17orf75Q9HAS0 396 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 PARVGQ9HBI0 331 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 ZBTB42B2RXF5 422 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 BIN1O00499 593 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 HIP1RO75146 1068 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 CAVIN2O95810 425 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 ASGR1P07306 291 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 PPP1R2P41236 205 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 EHHADHQ08426 723 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 RAD51AP2Q09MP3 1159 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 GRIK4Q16099 956 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 HERC4Q5GLZ8 1057 aaPredicted RBP11.9□□□□□ -0.5
SS18-213ENST00000579640 RETREG2Q8NC44 543 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 SLC17A8Q8NDX2 589 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 TCP11Q8WWU5 503 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 ZNF333Q96JL9 665 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 RNF208Q9H0X6 261 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 LARSQ9P2J5 1176 aaKnown RBP11.9□□□□□ -0.5
SS18-213ENST00000579640 DACH1Q9UI36 760 aa11.9□□□□□ -0.5
SS18-213ENST00000579640 SCN10AQ9Y5Y9 1956 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 IGKV6-21A0A0C4DH24 114 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 SMIM10L2AP0DMW4 78 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 SMIM10L2BP0DMW5 78 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 GNAT1P11488 350 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 CAPN2P17655 700 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 CACNB1Q02641 598 aaPredicted RBP11.89□□□□□ -0.51
SS18-213ENST00000579640 MAPK7Q13164 816 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 MTFR1Q15390 333 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 CT47A1Q5JQC4 288 aaPredicted RBP11.89□□□□□ -0.51
SS18-213ENST00000579640 FAM102BQ5T8I3 360 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 IER5Q5VY09 327 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 CXCL17Q6UXB2 119 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 MLKLQ8NB16 471 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 ZHX3Q9H4I2 956 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 XPNPEP1Q9NQW7 623 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 OLFML3Q9NRN5 406 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 KAT6AQ92794 2004 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 PCNTO95613 3336 aa11.89□□□□□ -0.51
SS18-213ENST00000579640 MYH11P35749 1972 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 RSPH10B2B2RC85 870 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 KBTBD13C9JR72 458 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 C22orf31O95567 290 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 MYCNP04198 464 aaPredicted RBP11.88□□□□□ -0.51
SS18-213ENST00000579640 RSPH10BP0C881 870 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 MAPTP10636 758 aaKnown RBP11.88□□□□□ -0.51
SS18-213ENST00000579640 PLS3P13797 630 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 DNM2P50570 870 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 ACLYP53396 1101 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 COBLL1Q53SF7 1204 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 FAM26FQ5R3K3 315 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 DAW1Q8N136 415 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 MYCT1Q8N699 235 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 C7orf31Q8N865 590 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 DEFB118Q96PH6 123 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 SEZ6LQ9BYH1 1024 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 TSPY26PQ9H489 355 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 OGDHLQ9ULD0 1010 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 DNM1LO00429 736 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 KIF20AO95235 890 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 SCP2P22307 547 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 KLRC1P26715 233 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 TMOD1P28289 359 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 ARL2P36404 184 aa11.88□□□□□ -0.51
SS18-213ENST00000579640 IGBP1P78318 339 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms