RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 GRAMD4Q6IC98 578 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 TCTN3Q6NUS6 607 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 GIMAP6Q6P9H5 292 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 HOMER1Q86YM7 354 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 RTKN2Q8IZC4 609 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 RNPC3Q96LT9 517 aaKnown RBP4.6□□□□□ -1.67
NUP88-209ENST00000574855 KRTAP3-1Q9BYR8 98 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 SEMA4AQ9H3S1 761 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 PCIF1Q9H4Z3 704 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 PIF1Q9H611 641 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 INTS7Q9NVH2 962 aaKnown RBP4.6□□□□□ -1.67
NUP88-209ENST00000574855 MAGEC2Q9UBF1 373 aaPredicted RBP4.6□□□□□ -1.67
NUP88-209ENST00000574855 TSC22D4Q9Y3Q8 395 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 TCAF1Q9Y4C2 921 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 RIPOR2Q9Y4F9 1068 aa4.6□□□□□ -1.67
NUP88-209ENST00000574855 PLEKHD1A6NEE1 506 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 SDSP20132 328 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 FNTBP49356 437 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 ALDH6A1Q02252 535 aaKnown RBP4.59□□□□□ -1.67
NUP88-209ENST00000574855 NFYCQ13952 458 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 NOLC1Q14978 699 aaKnown RBP eCLIP4.59□□□□□ -1.67
NUP88-209ENST00000574855 AGBL4Q5VU57 503 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 CDCA2Q69YH5 1023 aaPredicted RBP4.59□□□□□ -1.67
NUP88-209ENST00000574855 TMEM200BQ69YZ2 307 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 ZNF585AQ6P3V2 769 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 ZNF662Q6ZS27 426 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 USP30Q70CQ3 517 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 LARP4Q71RC2 724 aaKnown RBP eCLIP4.59□□□□□ -1.67
NUP88-209ENST00000574855 FILIP1Q7Z7B0 1213 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 NME9Q86XW9 330 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 Q8TCH9 128 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 FOXB1Q99853 325 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 OR10A2Q9H208 303 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 C12orf65Q9H3J6 166 aaKnown RBP4.59□□□□□ -1.67
NUP88-209ENST00000574855 B4GALT6Q9UBX8 382 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 PUF60Q9UHX1 559 aaKnown RBP4.59□□□□□ -1.67
NUP88-209ENST00000574855 OAZ3Q9UMX2 235 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 ZFR2Q9UPR6 939 aaKnown RBP4.59□□□□□ -1.67
NUP88-209ENST00000574855 JAG2Q9Y219 1238 aa4.59□□□□□ -1.67
NUP88-209ENST00000574855 ARHGAP6O43182 974 aa4.58□□□□□ -1.68
NUP88-209ENST00000574855 FOXS1O43638 330 aa4.58□□□□□ -1.68
NUP88-209ENST00000574855 CDC14BO60729 498 aa4.58□□□□□ -1.68
NUP88-209ENST00000574855 MAFO75444 373 aaPredicted RBP4.58□□□□□ -1.68
NUP88-209ENST00000574855 MRE11P49959 708 aa4.58□□□□□ -1.68
NUP88-209ENST00000574855 ROM1Q03395 351 aa4.58□□□□□ -1.68
NUP88-209ENST00000574855 PCOLCEQ15113 449 aa4.58□□□□□ -1.68
NUP88-209ENST00000574855 C16orf86Q6ZW13 317 aa4.58□□□□□ -1.68
NUP88-209ENST00000574855 RTN4RL1Q86UN2 441 aaPredicted RBP4.58□□□□□ -1.68
NUP88-209ENST00000574855 KIAA1958Q8N8K9 716 aa4.58□□□□□ -1.68
NUP88-209ENST00000574855 APPBP2Q92624 585 aa4.58□□□□□ -1.68
NUP88-209ENST00000574855 FOXRED1Q96CU9 486 aaPredicted RBP4.58□□□□□ -1.68
NUP88-209ENST00000574855 WWC2-AS2Q96NR7 200 aa4.58□□□□□ -1.68
NUP88-209ENST00000574855 KIAA1683Q9H0B3 1180 aa4.58□□□□□ -1.68
NUP88-209ENST00000574855 MSL2Q9HCI7 577 aa4.58□□□□□ -1.68
NUP88-209ENST00000574855 FAM184BQ9ULE4 1060 aa4.58□□□□□ -1.68
NUP88-209ENST00000574855 ZKSCAN5Q9Y2L8 839 aa4.58□□□□□ -1.68
NUP88-209ENST00000574855 CBX4O00257 560 aa4.57□□□□□ -1.68
NUP88-209ENST00000574855 DVL2O14641 736 aa4.57□□□□□ -1.68
NUP88-209ENST00000574855 RPS19P39019 145 aaKnown RBP4.57□□□□□ -1.68
NUP88-209ENST00000574855 SELENOPP49908 381 aa4.57□□□□□ -1.68
NUP88-209ENST00000574855 NEK4P51957 841 aa4.57□□□□□ -1.68
NUP88-209ENST00000574855 SLC6A3Q01959 620 aa4.57□□□□□ -1.68
NUP88-209ENST00000574855 TBR1Q16650 682 aa4.57□□□□□ -1.68
NUP88-209ENST00000574855 TTC38Q5R3I4 469 aa4.57□□□□□ -1.68
NUP88-209ENST00000574855 KIF18BQ86Y91 864 aa4.57□□□□□ -1.68
NUP88-209ENST00000574855 SH3RF3Q8TEJ3 882 aaPredicted RBP4.57□□□□□ -1.68
NUP88-209ENST00000574855 MAML3Q96JK9 1138 aa4.57□□□□□ -1.68
NUP88-209ENST00000574855 FANCLQ9NW38 375 aa4.57□□□□□ -1.68
NUP88-209ENST00000574855 IFT57Q9NWB7 429 aa4.57□□□□□ -1.68
NUP88-209ENST00000574855 SAE1Q9UBE0 346 aaPredicted RBP4.57□□□□□ -1.68
NUP88-209ENST00000574855 VWA7Q9Y334 891 aa4.57□□□□□ -1.68
NUP88-209ENST00000574855 TESMINQ9Y4I5 508 aa4.57□□□□□ -1.68
NUP88-209ENST00000574855 CD2APQ9Y5K6 639 aa4.57□□□□□ -1.68
NUP88-209ENST00000574855 UBA6A0AVT1 1052 aaPredicted RBP4.56□□□□□ -1.68
NUP88-209ENST00000574855 MATN2O00339 956 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 MUSKO15146 869 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 H2AFYO75367 372 aaKnown RBP4.56□□□□□ -1.68
NUP88-209ENST00000574855 COMTP21964 271 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 PTX3P26022 381 aaPredicted RBP4.56□□□□□ -1.68
NUP88-209ENST00000574855 RGS3P49796 1198 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 STAT5BP51692 787 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 SESN2P58004 480 aaPredicted RBP4.56□□□□□ -1.68
NUP88-209ENST00000574855 ADCY1Q08828 1119 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 PRKD1Q15139 912 aaPredicted RBP4.56□□□□□ -1.68
NUP88-209ENST00000574855 CDSNQ15517 529 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 C21orf62-AS1Q17RA5 79 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 SLFN12LQ6IEE8 588 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 PALM2Q8IXS6 379 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 EXOC8Q8IYI6 725 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 FUKQ8N0W3 1084 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 C16orf92Q96LL3 132 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 TUBGCP5Q96RT8 1024 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 DPYSL5Q9BPU6 564 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 ORAI3Q9BRQ5 295 aa4.56□□□□□ -1.68
NUP88-209ENST00000574855 PMS2P1A4D2B8 440 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 MAFGO15525 162 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 GAS7O60861 476 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 RAB11FIP3O75154 756 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 RAD17O75943 681 aa4.55□□□□□ -1.68
NUP88-209ENST00000574855 PRLP01236 227 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms