RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PCDHA10Q9Y5I2 948 aa23.89■■□□□ 1.41
VPS53-216ENST00000574029 PPFIA3O75145 1194 aa23.88■■□□□ 1.41
VPS53-216ENST00000574029 GLP2RO95838 553 aa23.88■■□□□ 1.41
VPS53-216ENST00000574029 GNA11P29992 359 aa23.88■■□□□ 1.41
VPS53-216ENST00000574029 DSC3Q14574 896 aa23.88■■□□□ 1.41
VPS53-216ENST00000574029 RBM23Q86U06 439 aaKnown RBP23.88■■□□□ 1.41
VPS53-216ENST00000574029 RNF135Q8IUD6 432 aa23.88■■□□□ 1.41
VPS53-216ENST00000574029 FBXL16Q8N461 479 aa23.88■■□□□ 1.41
VPS53-216ENST00000574029 SMRP1Q8NCR6 262 aa23.88■■□□□ 1.41
VPS53-216ENST00000574029 BRF1Q92994 677 aa23.88■■□□□ 1.41
VPS53-216ENST00000574029 PPP1R16BQ96T49 567 aa23.88■■□□□ 1.41
VPS53-216ENST00000574029 ELAC1Q9H777 363 aaKnown RBP23.88■■□□□ 1.41
VPS53-216ENST00000574029 TMEM161AQ9NX61 479 aa23.88■■□□□ 1.41
VPS53-216ENST00000574029 MUTYHQ9UIF7 546 aa23.88■■□□□ 1.41
VPS53-216ENST00000574029 CEP131Q9UPN4 1083 aa23.88■■□□□ 1.41
VPS53-216ENST00000574029 VTNP04004 478 aa23.87■■□□□ 1.41
VPS53-216ENST00000574029 PRR16Q569H4 304 aa23.87■■□□□ 1.41
VPS53-216ENST00000574029 SPOUT1Q5T280 376 aaKnown RBP23.87■■□□□ 1.41
VPS53-216ENST00000574029 METTL13Q8N6R0 699 aa23.87■■□□□ 1.41
VPS53-216ENST00000574029 LENG9Q96B70 501 aa23.87■■□□□ 1.41
VPS53-216ENST00000574029 GABBR1Q9UBS5 961 aa23.87■■□□□ 1.41
VPS53-216ENST00000574029 TCEAL9Q9UHQ7 104 aa23.87■■□□□ 1.41
VPS53-216ENST00000574029 MAGEB2O15479 319 aa23.86■■□□□ 1.41
VPS53-216ENST00000574029 FGF18O76093 207 aa23.86■■□□□ 1.41
VPS53-216ENST00000574029 NTRK3Q16288 839 aa23.86■■□□□ 1.41
VPS53-216ENST00000574029 LINC01465Q8N7H1 131 aa23.86■■□□□ 1.41
VPS53-216ENST00000574029 COLGALT1Q8NBJ5 622 aa23.86■■□□□ 1.41
VPS53-216ENST00000574029 JAKMIP1Q96N16 626 aaKnown RBP23.86■■□□□ 1.41
VPS53-216ENST00000574029 CWH43Q9H720 699 aa23.86■■□□□ 1.41
VPS53-216ENST00000574029 TLE6Q9H808 572 aa23.86■■□□□ 1.41
VPS53-216ENST00000574029 ATP6V0A4Q9HBG4 840 aa23.86■■□□□ 1.41
VPS53-216ENST00000574029 TLR9Q9NR96 1032 aa23.86■■□□□ 1.41
VPS53-216ENST00000574029 TYW1Q9NV66 732 aaKnown RBP23.86■■□□□ 1.41
VPS53-216ENST00000574029 HCSTQ9UBK5 93 aa23.86■■□□□ 1.41
VPS53-216ENST00000574029 BARX2Q9UMQ3 279 aaPredicted RBP23.86■■□□□ 1.41
VPS53-216ENST00000574029 SNX14Q9Y5W7 946 aa23.86■■□□□ 1.41
VPS53-216ENST00000574029 C5orf42Q9H799 3197 aa23.85■■□□□ 1.41
VPS53-216ENST00000574029 FGFR1P11362 822 aa23.85■■□□□ 1.41
VPS53-216ENST00000574029 HSPA4P34932 840 aa23.85■■□□□ 1.41
VPS53-216ENST00000574029 BLOC1S2Q6QNY1 142 aa23.85■■□□□ 1.41
VPS53-216ENST00000574029 TRMT1LQ7Z2T5 733 aaKnown RBP23.85■■□□□ 1.41
VPS53-216ENST00000574029 BICD2Q8TD16 824 aa23.85■■□□□ 1.41
VPS53-216ENST00000574029 RASGRP4Q8TDF6 673 aa23.85■■□□□ 1.41
VPS53-216ENST00000574029 MICAL1Q8TDZ2 1067 aa23.85■■□□□ 1.41
VPS53-216ENST00000574029 PHKBQ93100 1093 aa23.85■■□□□ 1.41
VPS53-216ENST00000574029 FAM167AQ96KS9 214 aa23.85■■□□□ 1.41
VPS53-216ENST00000574029 AGXT2Q9BYV1 514 aa23.85■■□□□ 1.41
VPS53-216ENST00000574029 KCNH6Q9H252 994 aa23.85■■□□□ 1.41
VPS53-216ENST00000574029 FSCN2O14926 492 aa23.84■■□□□ 1.41
VPS53-216ENST00000574029 EDIL3O43854 480 aa23.84■■□□□ 1.41
VPS53-216ENST00000574029 CLCN3P51790 818 aa23.84■■□□□ 1.41
VPS53-216ENST00000574029 ERVFC1P60507 584 aa23.84■■□□□ 1.41
VPS53-216ENST00000574029 PDE12Q6L8Q7 609 aaKnown RBP23.84■■□□□ 1.41
VPS53-216ENST00000574029 EFCAB12Q6NXP0 572 aa23.84■■□□□ 1.41
VPS53-216ENST00000574029 HFE2Q6ZVN8 426 aa23.84■■□□□ 1.41
VPS53-216ENST00000574029 CDCA3Q99618 268 aaPredicted RBP23.84■■□□□ 1.41
VPS53-216ENST00000574029 RNF26Q9BY78 433 aaPredicted RBP23.84■■□□□ 1.41
VPS53-216ENST00000574029 ADAMTS10Q9H324 1103 aa23.84■■□□□ 1.41
VPS53-216ENST00000574029 SAMM50Q9Y512 469 aa23.84■■□□□ 1.41
VPS53-216ENST00000574029 FSD2A1L4K1 749 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 WDR64B1ANS9 1081 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 LOC730098B7Z3J9 87 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 PER2O15055 1255 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 LAG3P18627 525 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 NLRP11P59045 1033 aaKnown RBP23.83■■□□□ 1.41
VPS53-216ENST00000574029 AKAP17AQ02040 695 aaKnown RBP23.83■■□□□ 1.41
VPS53-216ENST00000574029 DUSP6Q16828 381 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 THNSL1Q8IYQ7 743 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 ZNF710Q8N1W2 664 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 CCDC148Q8NFR7 591 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 EDAQ92838 391 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 MAP7D2Q96T17 732 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 TMEM117Q9H0C3 514 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 RNF19AQ9NV58 838 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 AKT3Q9Y243 479 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 LZTS1Q9Y250 596 aa23.83■■□□□ 1.41
VPS53-216ENST00000574029 USP15Q9Y4E8 981 aaPredicted RBP23.83■■□□□ 1.41
VPS53-216ENST00000574029 ZNF862O60290 1169 aa23.82■■□□□ 1.4
VPS53-216ENST00000574029 OATP04181 439 aa23.82■■□□□ 1.4
VPS53-216ENST00000574029 RPS6KB1P23443 525 aa23.82■■□□□ 1.4
VPS53-216ENST00000574029 TMOD1P28289 359 aa23.82■■□□□ 1.4
VPS53-216ENST00000574029 PLCB3Q01970 1234 aa23.82■■□□□ 1.4
VPS53-216ENST00000574029 CBX2Q14781 532 aaPredicted RBP23.82■■□□□ 1.4
VPS53-216ENST00000574029 VN1R2Q8NFZ6 395 aa23.82■■□□□ 1.4
VPS53-216ENST00000574029 CASD1Q96PB1 797 aa23.82■■□□□ 1.4
VPS53-216ENST00000574029 RIT2Q99578 217 aa23.82■■□□□ 1.4
VPS53-216ENST00000574029 DISC1Q9NRI5 854 aa23.82■■□□□ 1.4
VPS53-216ENST00000574029 MSH4O15457 936 aa23.81■■□□□ 1.4
VPS53-216ENST00000574029 HOXA2O43364 376 aa23.81■■□□□ 1.4
VPS53-216ENST00000574029 IFNAR1P17181 557 aa23.81■■□□□ 1.4
VPS53-216ENST00000574029 EIF4BP23588 611 aaKnown RBP23.81■■□□□ 1.4
VPS53-216ENST00000574029 USP11P51784 963 aa23.81■■□□□ 1.4
VPS53-216ENST00000574029 EVCP57679 992 aa23.81■■□□□ 1.4
VPS53-216ENST00000574029 LRRC55Q6ZSA7 311 aa23.81■■□□□ 1.4
VPS53-216ENST00000574029 LRRC71Q8N4P6 559 aa23.81■■□□□ 1.4
VPS53-216ENST00000574029 MRPS27Q92552 414 aaKnown RBP23.81■■□□□ 1.4
VPS53-216ENST00000574029 SLC5A5Q92911 643 aa23.81■■□□□ 1.4
VPS53-216ENST00000574029 NRBP2Q9NSY0 501 aa23.81■■□□□ 1.4
VPS53-216ENST00000574029 VPS54Q9P1Q0 977 aa23.81■■□□□ 1.4
VPS53-216ENST00000574029 ZSCAN20P17040 1043 aaPredicted RBP23.8■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms