RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 PTPN5P54829 565 aa21.83■■□□□ 1.09
NUP88-203ENST00000572019 FAM189BP81408 668 aa21.83■■□□□ 1.09
NUP88-203ENST00000572019 PDXDC2PQ6P474 469 aa21.83■■□□□ 1.09
NUP88-203ENST00000572019 SUGP1Q8IWZ8 645 aaKnown RBP21.83■■□□□ 1.09
NUP88-203ENST00000572019 NEK1Q96PY6 1258 aa21.83■■□□□ 1.09
NUP88-203ENST00000572019 ESYT1Q9BSJ8 1104 aa21.83■■□□□ 1.09
NUP88-203ENST00000572019 ZNF302Q9NR11 478 aa21.83■■□□□ 1.09
NUP88-203ENST00000572019 C1orf112Q9NSG2 853 aa21.83■■□□□ 1.09
NUP88-203ENST00000572019 CFAP54Q96N23 3096 aa21.83■■□□□ 1.08
NUP88-203ENST00000572019 SMCO2A6NFE2 343 aa21.82■■□□□ 1.08
NUP88-203ENST00000572019 TECP42680 631 aa21.82■■□□□ 1.08
NUP88-203ENST00000572019 SLC26A2P50443 739 aa21.82■■□□□ 1.08
NUP88-203ENST00000572019 JAKMIP3Q5VZ66 844 aa21.82■■□□□ 1.08
NUP88-203ENST00000572019 ANKRD54Q6NXT1 300 aa21.82■■□□□ 1.08
NUP88-203ENST00000572019 PLA2G4DQ86XP0 818 aa21.82■■□□□ 1.08
NUP88-203ENST00000572019 FEZF2Q8TBJ5 459 aa21.82■■□□□ 1.08
NUP88-203ENST00000572019 CRYGNQ8WXF5 182 aa21.82■■□□□ 1.08
NUP88-203ENST00000572019 TNPO1Q92973 898 aaKnown RBP21.82■■□□□ 1.08
NUP88-203ENST00000572019 ZNF668Q96K58 619 aaPredicted RBP21.82■■□□□ 1.08
NUP88-203ENST00000572019 CASD1Q96PB1 797 aa21.82■■□□□ 1.08
NUP88-203ENST00000572019 SMOC2Q9H3U7 446 aa21.82■■□□□ 1.08
NUP88-203ENST00000572019 COL1A2P08123 1366 aa21.82■■□□□ 1.08
NUP88-203ENST00000572019 CDC27P30260 824 aa21.81■■□□□ 1.08
NUP88-203ENST00000572019 CLCN3P51790 818 aa21.81■■□□□ 1.08
NUP88-203ENST00000572019 PTPN21Q16825 1174 aa21.81■■□□□ 1.08
NUP88-203ENST00000572019 TMEM184AQ6ZMB5 413 aa21.81■■□□□ 1.08
NUP88-203ENST00000572019 MRPS27Q92552 414 aaKnown RBP21.81■■□□□ 1.08
NUP88-203ENST00000572019 TCF25Q9BQ70 676 aa21.81■■□□□ 1.08
NUP88-203ENST00000572019 ATP6V0A4Q9HBG4 840 aa21.81■■□□□ 1.08
NUP88-203ENST00000572019 AAASQ9NRG9 546 aa21.81■■□□□ 1.08
NUP88-203ENST00000572019 TMEM161AQ9NX61 479 aa21.81■■□□□ 1.08
NUP88-203ENST00000572019 GPR182O15218 404 aa21.8■■□□□ 1.08
NUP88-203ENST00000572019 FOSP01100 380 aaPredicted RBP21.8■■□□□ 1.08
NUP88-203ENST00000572019 CRYBB1P53674 252 aaPredicted RBP21.8■■□□□ 1.08
NUP88-203ENST00000572019 RTN1Q16799 776 aa21.8■■□□□ 1.08
NUP88-203ENST00000572019 ZNF484Q5JVG2 852 aa21.8■■□□□ 1.08
NUP88-203ENST00000572019 FAM160B1Q5W0V3 765 aa21.8■■□□□ 1.08
NUP88-203ENST00000572019 PPP1R18Q6NYC8 613 aa21.8■■□□□ 1.08
NUP88-203ENST00000572019 SKAP1Q86WV1 359 aa21.8■■□□□ 1.08
NUP88-203ENST00000572019 METTL13Q8N6R0 699 aa21.8■■□□□ 1.08
NUP88-203ENST00000572019 CDCA3Q99618 268 aaPredicted RBP21.8■■□□□ 1.08
NUP88-203ENST00000572019 BARHL2Q9NY43 387 aa21.8■■□□□ 1.08
NUP88-203ENST00000572019 ZFHX2Q9C0A1 2572 aaPredicted RBP21.8■■□□□ 1.08
NUP88-203ENST00000572019 IPO5O00410 1097 aaKnown RBP21.79■■□□□ 1.08
NUP88-203ENST00000572019 LAG3P18627 525 aa21.79■■□□□ 1.08
NUP88-203ENST00000572019 AVPR2P30518 371 aa21.79■■□□□ 1.08
NUP88-203ENST00000572019 ZNF76P36508 570 aa21.79■■□□□ 1.08
NUP88-203ENST00000572019 EXOSC10Q01780 885 aaKnown RBP21.79■■□□□ 1.08
NUP88-203ENST00000572019 PLCB3Q01970 1234 aa21.79■■□□□ 1.08
NUP88-203ENST00000572019 CLLU1OSQ5K130 101 aa21.79■■□□□ 1.08
NUP88-203ENST00000572019 KCNT2Q6UVM3 1135 aa21.79■■□□□ 1.08
NUP88-203ENST00000572019 NIPA1Q7RTP0 329 aa21.79■■□□□ 1.08
NUP88-203ENST00000572019 ENTPD7Q9NQZ7 604 aa21.79■■□□□ 1.08
NUP88-203ENST00000572019 MAFBQ9Y5Q3 323 aaPredicted RBP21.79■■□□□ 1.08
NUP88-203ENST00000572019 MYO15AQ9UKN7 3530 aa21.79■■□□□ 1.08
NUP88-203ENST00000572019 AP3B2Q13367 1082 aa21.78■■□□□ 1.08
NUP88-203ENST00000572019 ADCK5Q3MIX3 580 aa21.78■■□□□ 1.08
NUP88-203ENST00000572019 MIS18BP1Q6P0N0 1132 aa21.78■■□□□ 1.08
NUP88-203ENST00000572019 CKAP2LQ8IYA6 745 aa21.78■■□□□ 1.08
NUP88-203ENST00000572019 LRRC71Q8N4P6 559 aa21.78■■□□□ 1.08
NUP88-203ENST00000572019 LINC01465Q8N7H1 131 aa21.78■■□□□ 1.08
NUP88-203ENST00000572019 RASGRP4Q8TDF6 673 aa21.78■■□□□ 1.08
NUP88-203ENST00000572019 TMEM117Q9H0C3 514 aa21.78■■□□□ 1.08
NUP88-203ENST00000572019 ADAMTS10Q9H324 1103 aa21.78■■□□□ 1.08
NUP88-203ENST00000572019 ELAC1Q9H777 363 aaKnown RBP21.78■■□□□ 1.08
NUP88-203ENST00000572019 ANO2Q9NQ90 1003 aa21.78■■□□□ 1.08
NUP88-203ENST00000572019 RBM28Q9NW13 759 aaKnown RBP21.78■■□□□ 1.08
NUP88-203ENST00000572019 LZTS1Q9Y250 596 aa21.78■■□□□ 1.08
NUP88-203ENST00000572019 ZBTB43O43298 467 aa21.77■■□□□ 1.08
NUP88-203ENST00000572019 WEE2P0C1S8 567 aa21.77■■□□□ 1.08
NUP88-203ENST00000572019 FGFR4P22455 802 aa21.77■■□□□ 1.08
NUP88-203ENST00000572019 NLRP11P59045 1033 aaKnown RBP21.77■■□□□ 1.08
NUP88-203ENST00000572019 KANK3Q6NY19 840 aa21.77■■□□□ 1.08
NUP88-203ENST00000572019 RASEFQ8IZ41 740 aa21.77■■□□□ 1.08
NUP88-203ENST00000572019 BBXQ8WY36 941 aaPredicted RBP21.77■■□□□ 1.08
NUP88-203ENST00000572019 EDIL3O43854 480 aa21.76■■□□□ 1.07
NUP88-203ENST00000572019 PDE12Q6L8Q7 609 aaKnown RBP21.76■■□□□ 1.07
NUP88-203ENST00000572019 ECHDC2Q86YB7 292 aa21.76■■□□□ 1.07
NUP88-203ENST00000572019 SNX27Q96L92 541 aa21.76■■□□□ 1.07
NUP88-203ENST00000572019 ZNF577Q9BSK1 485 aa21.76■■□□□ 1.07
NUP88-203ENST00000572019 POMKQ9H5K3 350 aa21.76■■□□□ 1.07
NUP88-203ENST00000572019 TSHZ2Q9NRE2 1034 aa21.76■■□□□ 1.07
NUP88-203ENST00000572019 GABBR1Q9UBS5 961 aa21.76■■□□□ 1.07
NUP88-203ENST00000572019 HCFC2Q9Y5Z7 792 aa21.76■■□□□ 1.07
NUP88-203ENST00000572019 DENND4AQ7Z401 1863 aa21.75■■□□□ 1.07
NUP88-203ENST00000572019 GOLGA8AA7E2F4 631 aa21.75■■□□□ 1.07
NUP88-203ENST00000572019 GOLGA8BA8MQT2 603 aa21.75■■□□□ 1.07
NUP88-203ENST00000572019 C2CD4DB7Z1M9 353 aa21.75■■□□□ 1.07
NUP88-203ENST00000572019 H0Y858 1186 aa21.75■■□□□ 1.07
NUP88-203ENST00000572019 ZNF862O60290 1169 aa21.75■■□□□ 1.07
NUP88-203ENST00000572019 CYP3A4P08684 503 aa21.75■■□□□ 1.07
NUP88-203ENST00000572019 PKN1Q16512 942 aa21.75■■□□□ 1.07
NUP88-203ENST00000572019 SYNE3Q6ZMZ3 975 aa21.75■■□□□ 1.07
NUP88-203ENST00000572019 RNF169Q8NCN4 708 aa21.75■■□□□ 1.07
NUP88-203ENST00000572019 KREMEN2Q8NCW0 462 aa21.75■■□□□ 1.07
NUP88-203ENST00000572019 ZNF558Q96NG5 402 aa21.75■■□□□ 1.07
NUP88-203ENST00000572019 KLF18A0A0U1RQI7 1052 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 NT5C1B-RDH14C9J2C7 533 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 GFRA3O60609 400 aa21.74■■□□□ 1.07
NUP88-203ENST00000572019 CSDE1O75534 798 aaKnown RBP21.74■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms