RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 C9IYK1 514 aa12.68□□□□□ -0.38
VPS53-207ENST00000570510 ATP9AO75110 1047 aa12.68□□□□□ -0.38
VPS53-207ENST00000570510 CFHP08603 1231 aa12.68□□□□□ -0.38
VPS53-207ENST00000570510 ZSCAN20P17040 1043 aaPredicted RBP12.68□□□□□ -0.38
VPS53-207ENST00000570510 TBC1D8BQ0IIM8 1120 aa12.68□□□□□ -0.38
VPS53-207ENST00000570510 PLCB4Q15147 1175 aa12.68□□□□□ -0.38
VPS53-207ENST00000570510 KIAA0319Q5VV43 1072 aa12.68□□□□□ -0.38
VPS53-207ENST00000570510 USP17L6PQ6QN14 398 aa12.68□□□□□ -0.38
VPS53-207ENST00000570510 TMEM169Q96HH4 297 aa12.68□□□□□ -0.38
VPS53-207ENST00000570510 ELAC1Q9H777 363 aaKnown RBP12.68□□□□□ -0.38
VPS53-207ENST00000570510 JPH1Q9HDC5 661 aaPredicted RBP12.68□□□□□ -0.38
VPS53-207ENST00000570510 ZNF292O60281 2723 aa12.68□□□□□ -0.38
VPS53-207ENST00000570510 DMXL1Q9Y485 3027 aa12.68□□□□□ -0.38
VPS53-207ENST00000570510 KINO60870 393 aaKnown RBP12.67□□□□□ -0.38
VPS53-207ENST00000570510 KCNA2P16389 499 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 KLRC1P26715 233 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 STAT5BP51692 787 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 TRDNQ13061 729 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 GIT2Q14161 759 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 ANKRD45Q5TZF3 282 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 KANK3Q6NY19 840 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 MTHFD1LQ6UB35 978 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 GPR161Q8N6U8 529 aaKnown RBP12.67□□□□□ -0.38
VPS53-207ENST00000570510 PPP1R16BQ96T49 567 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 SDF4Q9BRK5 362 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 RIOX1Q9H6W3 641 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 IGSF9Q9P2J2 1179 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 WNT16Q9UBV4 365 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 SLC9A2Q9UBY0 812 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 SEC63Q9UGP8 760 aaKnown RBP12.67□□□□□ -0.38
VPS53-207ENST00000570510 CDV3Q9UKY7 258 aaKnown RBP12.67□□□□□ -0.38
VPS53-207ENST00000570510 CA14Q9ULX7 337 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 SIT1Q9Y3P8 196 aa12.67□□□□□ -0.38
VPS53-207ENST00000570510 TPRP12270 2363 aaKnown RBP12.66□□□□□ -0.38
VPS53-207ENST00000570510 BACH1O14867 736 aa12.66□□□□□ -0.38
VPS53-207ENST00000570510 MAFGO15525 162 aa12.66□□□□□ -0.38
VPS53-207ENST00000570510 EPCAMP16422 314 aa12.66□□□□□ -0.38
VPS53-207ENST00000570510 GBP2P32456 591 aaPredicted RBP12.66□□□□□ -0.38
VPS53-207ENST00000570510 METAP2P50579 478 aaKnown RBP eCLIP12.66□□□□□ -0.38
VPS53-207ENST00000570510 KIZQ2M2Z5 673 aa12.66□□□□□ -0.38
VPS53-207ENST00000570510 PLPPR4Q7Z2D5 763 aa12.66□□□□□ -0.38
VPS53-207ENST00000570510 PPFIBP1Q86W92 1011 aa12.66□□□□□ -0.38
VPS53-207ENST00000570510 C1orf210Q8IVY1 113 aa12.66□□□□□ -0.38
VPS53-207ENST00000570510 VPS52Q8N1B4 723 aa12.66□□□□□ -0.38
VPS53-207ENST00000570510 RRP36Q96EU6 259 aaKnown RBP12.66□□□□□ -0.38
VPS53-207ENST00000570510 CASD1Q96PB1 797 aa12.66□□□□□ -0.38
VPS53-207ENST00000570510 SFXN1Q9H9B4 322 aa12.66□□□□□ -0.38
VPS53-207ENST00000570510 TBC1D17Q9HA65 648 aa12.66□□□□□ -0.38
VPS53-207ENST00000570510 DOCK5Q9H7D0 1870 aa12.65□□□□□ -0.38
VPS53-207ENST00000570510 SPDYE3A6NKU9 549 aa12.65□□□□□ -0.38
VPS53-207ENST00000570510 NT5C1B-RDH14C9J2C7 533 aa12.65□□□□□ -0.38
VPS53-207ENST00000570510 DCNP07585 359 aaKnown RBP12.65□□□□□ -0.38
VPS53-207ENST00000570510 SP9P0CG40 484 aa12.65□□□□□ -0.38
VPS53-207ENST00000570510 FAM189BP81408 668 aa12.65□□□□□ -0.38
VPS53-207ENST00000570510 GRM4Q14833 912 aa12.65□□□□□ -0.38
VPS53-207ENST00000570510 LRRC55Q6ZSA7 311 aa12.65□□□□□ -0.38
VPS53-207ENST00000570510 SLC39A11Q8N1S5 342 aa12.65□□□□□ -0.38
VPS53-207ENST00000570510 METTL13Q8N6R0 699 aa12.65□□□□□ -0.38
VPS53-207ENST00000570510 OSMRQ99650 979 aa12.65□□□□□ -0.38
VPS53-207ENST00000570510 MRPL9Q9BYD2 267 aaKnown RBP12.65□□□□□ -0.38
VPS53-207ENST00000570510 RWDD1Q9H446 243 aaPredicted RBP12.65□□□□□ -0.38
VPS53-207ENST00000570510 CDHR5Q9HBB8 845 aa12.65□□□□□ -0.38
VPS53-207ENST00000570510 PCDHB15Q9Y5E8 787 aa12.65□□□□□ -0.38
VPS53-207ENST00000570510 PRR5-ARHGAP8B1AHC4 643 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 PIK3CDO00329 1044 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 IFIT3O14879 490 aaKnown RBP12.64□□□□□ -0.39
VPS53-207ENST00000570510 NARSO43776 548 aaKnown RBP12.64□□□□□ -0.39
VPS53-207ENST00000570510 HBP1O60381 514 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 ITGB5P18084 799 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 KLRC2P26717 231 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 SLC26A2P50443 739 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 CRYBB1P53674 252 aaPredicted RBP12.64□□□□□ -0.39
VPS53-207ENST00000570510 PDE1AP54750 535 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 ARHGAP8P85298 464 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 SART3Q15020 963 aaKnown RBP12.64□□□□□ -0.39
VPS53-207ENST00000570510 LETM2Q2VYF4 491 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 VARS2Q5ST30 1063 aaKnown RBP12.64□□□□□ -0.39
VPS53-207ENST00000570510 ELMSAN1Q6PJG2 1045 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 CWC27Q6UX04 472 aaKnown RBP12.64□□□□□ -0.39
VPS53-207ENST00000570510 GPR149Q86SP6 731 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 CKAP2LQ8IYA6 745 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 KIAA0319LQ8IZA0 1049 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 TMEM40Q8WWA1 233 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 ATRIPQ8WXE1 791 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 AUTS2Q8WXX7 1259 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 STAMQ92783 540 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 PSTPIP2Q9H939 334 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 DIAPH3Q9NSV4 1193 aa12.64□□□□□ -0.39
VPS53-207ENST00000570510 CARNS1A5YM72 827 aa12.63□□□□□ -0.39
VPS53-207ENST00000570510 CYTH3O43739 400 aa12.63□□□□□ -0.39
VPS53-207ENST00000570510 ZC3H11AO75152 810 aaKnown RBP eCLIP12.63□□□□□ -0.39
VPS53-207ENST00000570510 ARP10275 920 aa12.63□□□□□ -0.39
VPS53-207ENST00000570510 ATXN1P54253 815 aaKnown RBP12.63□□□□□ -0.39
VPS53-207ENST00000570510 BCAR1P56945 870 aa12.63□□□□□ -0.39
VPS53-207ENST00000570510 ACTR2P61160 394 aa12.63□□□□□ -0.39
VPS53-207ENST00000570510 FAM160B1Q5W0V3 765 aa12.63□□□□□ -0.39
VPS53-207ENST00000570510 CATIPQ7Z7H3 387 aa12.63□□□□□ -0.39
VPS53-207ENST00000570510 FAM228AQ86W67 206 aa12.63□□□□□ -0.39
VPS53-207ENST00000570510 HELQQ8TDG4 1101 aa12.63□□□□□ -0.39
VPS53-207ENST00000570510 SCLT1Q96NL6 688 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms