RNA–Protein interactions for RNA: ENST00000569225.5

CHD9-219, Transcript of chromodomain helicase DNA binding protein 9, human

TSL 2

Gene CHD9, Length 1,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD9-219	ENST00000569225	SSB	P05455	408 aa	Known RBP eCLIP	10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	PLCG1	P19174	1290 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	CMA1	P23946	247 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	RFC2	P35250	354 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	STAT6	P42226	847 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	TRIM71	Q2Q1W2	868 aa	Known RBP	10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	RESP18	Q5W5W9	173 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	PADI6	Q6TGC4	694 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	LRRC8D	Q7L1W4	858 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	SH3RF1	Q7Z6J0	888 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	TMEM199	Q8N511	208 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	DNAJB3	Q8WWF6	145 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	DHX38	Q92620	1227 aa	Known RBP	10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	TRIM43	Q96BQ3	446 aa	Predicted RBP	10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	CHAMP1	Q96JM3	812 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	PLIN2	Q99541	437 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	MTR	Q99707	1265 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	SH2D3A	Q9BRG2	576 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	PPP1R12C	Q9BZL4	782 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	KCND2	Q9NZV8	630 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	ZMYND8	Q9ULU4	1186 aa	Predicted RBP	10.15	□□□□□ -0.79
CHD9-219	ENST00000569225	AKT3	Q9Y243	479 aa		10.15	□□□□□ -0.79
CHD9-219	ENST00000569225		A0A1W2PQ27	194 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225		A0A1W2PQ64	194 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225		A0A1W2PQD8	194 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	RSPH10B2	B2RC85	870 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225		E9PMD0	336 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	USO1	O60763	962 aa	Known RBP	10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	PLA2G4B	P0C869	781 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	RSPH10B	P0C881	870 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	CKB	P12277	381 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	CYP11B2	P19099	503 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	MRPS6	P82932	125 aa	Known RBP	10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	MFSD5	Q6N075	450 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	SHC4	Q6S5L8	630 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	USP49	Q70CQ1	688 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	KIAA0319L	Q8IZA0	1049 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	LRRC71	Q8N4P6	559 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	IQUB	Q8NA54	791 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	PSPC1	Q8WXF1	523 aa	Known RBP	10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	RAD54L	Q92698	747 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	ZBTB10	Q96DT7	871 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	CEP89	Q96ST8	783 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	TIPIN	Q9BVW5	301 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	CUEDC2	Q9H467	287 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	GDPD2	Q9HCC8	539 aa		10.14	□□□□□ -0.79
CHD9-219	ENST00000569225	SUCLA2	Q9P2R7	463 aa	Predicted RBP	10.14	□□□□□ -0.79
CHD9-219	ENST00000569225		A0A087WWV3	80 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	SYN1	P17600	705 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	CYP2C18	P33260	490 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	CLCN3	P51790	818 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	MXD4	Q14582	209 aa	Predicted RBP	10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	FAM26D	Q5JW98	314 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	LINC01465	Q8N7H1	131 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	SYT2	Q8N9I0	419 aa	Predicted RBP	10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	LARP4B	Q92615	738 aa	Known RBP	10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	WNT8B	Q93098	351 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	SCLT1	Q96NL6	688 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	GBP4	Q96PP9	640 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	LRRC27	Q9C0I9	530 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	KCNH3	Q9ULD8	1083 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	ASAP2	O43150	1006 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	CTSH	P09668	335 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	IQCF3	P0C7M6	154 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	CCL23	P55773	120 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	FPGS	Q05932	587 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	PPIG	Q13427	754 aa	Known RBP eCLIP	10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	TFDP1	Q14186	410 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	ZNF618	Q5T7W0	954 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	FAM102B	Q5T8I3	360 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	KCNK18	Q7Z418	384 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	RPUSD2	Q8IZ73	545 aa	Known RBP	10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	PDILT	Q8N807	584 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	MRPS27	Q92552	414 aa	Known RBP	10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	KIFAP3	Q92845	792 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	TMEM143	Q96AN5	459 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	DRC1	Q96MC2	740 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	CELF4	Q9BZC1	486 aa	Known RBP	10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	MAGEF1	Q9HAY2	307 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	USP25	Q9UHP3	1055 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225	TRPV2	Q9Y5S1	764 aa		10.13	□□□□□ -0.79
CHD9-219	ENST00000569225		H0YGN5	161 aa		10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	KRT18	P05783	430 aa	Known RBP	10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	PFKM	P08237	780 aa		10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	GUCY2C	P25092	1073 aa		10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	SLC12A3	P55017	1021 aa		10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	FAM43B	Q6ZT52	329 aa	Predicted RBP	10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	SV2B	Q7L1I2	683 aa		10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	ZNF410	Q86VK4	478 aa		10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	GPBP1	Q86WP2	473 aa		10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	RHPN2	Q8IUC4	686 aa		10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	FSIP1	Q8NA03	581 aa		10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	USP38	Q8NB14	1042 aa		10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	PRPF31	Q8WWY3	499 aa	Known RBP	10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	NLRP7	Q8WX94	980 aa		10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	BAD	Q92934	168 aa		10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	DHX58	Q96C10	678 aa		10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	CCDC34	Q96HJ3	373 aa		10.12	□□□□□ -0.79
CHD9-219	ENST00000569225	PANK2	Q9BZ23	570 aa		10.12	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms