RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 EFHBQ8N7U6 833 aa16.91■□□□□ 0.3
CLN3-236ENST00000568558 CCDC148Q8NFR7 591 aa16.91■□□□□ 0.3
CLN3-236ENST00000568558 LENG9Q96B70 501 aa16.91■□□□□ 0.3
CLN3-236ENST00000568558 MSLNLQ96KJ4 702 aa16.91■□□□□ 0.3
CLN3-236ENST00000568558 RNF26Q9BY78 433 aaPredicted RBP16.91■□□□□ 0.3
CLN3-236ENST00000568558 GABBR1Q9UBS5 961 aa16.91■□□□□ 0.3
CLN3-236ENST00000568558 TCEAL9Q9UHQ7 104 aa16.91■□□□□ 0.3
CLN3-236ENST00000568558 CEP131Q9UPN4 1083 aa16.91■□□□□ 0.3
CLN3-236ENST00000568558 TBKBP1A7MCY6 615 aa16.9■□□□□ 0.3
CLN3-236ENST00000568558 GPR32O75388 356 aa16.9■□□□□ 0.3
CLN3-236ENST00000568558 HOXD11P31277 338 aaPredicted RBP16.9■□□□□ 0.3
CLN3-236ENST00000568558 NRIP1P48552 1158 aa16.9■□□□□ 0.3
CLN3-236ENST00000568558 AKAP17AQ02040 695 aaKnown RBP16.9■□□□□ 0.3
CLN3-236ENST00000568558 UBE3AQ05086 875 aa16.9■□□□□ 0.3
CLN3-236ENST00000568558 TRMT1LQ7Z2T5 733 aaKnown RBP16.9■□□□□ 0.3
CLN3-236ENST00000568558 METTL13Q8N6R0 699 aa16.9■□□□□ 0.3
CLN3-236ENST00000568558 LINC01465Q8N7H1 131 aa16.9■□□□□ 0.3
CLN3-236ENST00000568558 BICD2Q8TD16 824 aa16.9■□□□□ 0.3
CLN3-236ENST00000568558 FAM167AQ96KS9 214 aa16.9■□□□□ 0.3
CLN3-236ENST00000568558 POP1Q99575 1024 aaKnown RBP16.9■□□□□ 0.3
CLN3-236ENST00000568558 CLEC1BQ9P126 229 aa16.9■□□□□ 0.3
CLN3-236ENST00000568558 PCDHB12Q9Y5F1 795 aa16.9■□□□□ 0.3
CLN3-236ENST00000568558 ZNF318Q5VUA4 2279 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 WDR64B1ANS9 1081 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 MAGEB2O15479 319 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 EDIL3O43854 480 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 PPFIA3O75145 1194 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 EYA4O95677 639 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 GLP2RO95838 553 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 IFNAR1P17181 557 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 CLCN3P51790 818 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 DSC3Q14574 896 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 CSPP1Q1MSJ5 1256 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 SPOUT1Q5T280 376 aaKnown RBP16.89■□□□□ 0.29
CLN3-236ENST00000568558 UPF3BQ9BZI7 483 aaKnown RBP16.89■□□□□ 0.29
CLN3-236ENST00000568558 ELAC1Q9H777 363 aaKnown RBP16.89■□□□□ 0.29
CLN3-236ENST00000568558 AAASQ9NRG9 546 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 TMEM161AQ9NX61 479 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 VPS54Q9P1Q0 977 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 HCSTQ9UBK5 93 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 SAMM50Q9Y512 469 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 PCDHGC5Q9Y5F6 944 aa16.89■□□□□ 0.29
CLN3-236ENST00000568558 TRIOO75962 3097 aa16.88■□□□□ 0.29
CLN3-236ENST00000568558 ZNF862O60290 1169 aa16.88■□□□□ 0.29
CLN3-236ENST00000568558 FAM189BP81408 668 aa16.88■□□□□ 0.29
CLN3-236ENST00000568558 COASYQ13057 564 aa16.88■□□□□ 0.29
CLN3-236ENST00000568558 EFCAB12Q6NXP0 572 aa16.88■□□□□ 0.29
CLN3-236ENST00000568558 RBM23Q86U06 439 aaKnown RBP16.88■□□□□ 0.29
CLN3-236ENST00000568558 COLGALT1Q8NBJ5 622 aa16.88■□□□□ 0.29
CLN3-236ENST00000568558 SMRP1Q8NCR6 262 aa16.88■□□□□ 0.29
CLN3-236ENST00000568558 MAP7D2Q96T17 732 aa16.88■□□□□ 0.29
CLN3-236ENST00000568558 SLC26A6Q9BXS9 759 aa16.88■□□□□ 0.29
CLN3-236ENST00000568558 ATP6V0A4Q9HBG4 840 aa16.88■□□□□ 0.29
CLN3-236ENST00000568558 TLR9Q9NR96 1032 aa16.88■□□□□ 0.29
CLN3-236ENST00000568558 TYW1Q9NV66 732 aaKnown RBP16.88■□□□□ 0.29
CLN3-236ENST00000568558 TECTAO75443 2155 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 MSH4O15457 936 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 FGF18O76093 207 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 OATP04181 439 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 FGFR1P11362 822 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 PDIA3P30101 505 aaKnown RBP16.87■□□□□ 0.29
CLN3-236ENST00000568558 EVCP57679 992 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 NLRP11P59045 1033 aaKnown RBP16.87■□□□□ 0.29
CLN3-236ENST00000568558 CCT2P78371 535 aaKnown RBP16.87■□□□□ 0.29
CLN3-236ENST00000568558 PRKCEQ02156 737 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 RNF135Q8IUD6 432 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 THNSL1Q8IYQ7 743 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 LRRC71Q8N4P6 559 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 CCDC136Q96JN2 1154 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 CWH43Q9H720 699 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 TLE6Q9H808 572 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 NCOA5Q9HCD5 579 aaKnown RBP16.87■□□□□ 0.29
CLN3-236ENST00000568558 DISC1Q9NRI5 854 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 BARX2Q9UMQ3 279 aaPredicted RBP16.87■□□□□ 0.29
CLN3-236ENST00000568558 AKT3Q9Y243 479 aa16.87■□□□□ 0.29
CLN3-236ENST00000568558 NEFLP07196 543 aa16.86■□□□□ 0.29
CLN3-236ENST00000568558 CENPBP07199 599 aaPredicted RBP16.86■□□□□ 0.29
CLN3-236ENST00000568558 LAG3P18627 525 aa16.86■□□□□ 0.29
CLN3-236ENST00000568558 PSMA5P28066 241 aa16.86■□□□□ 0.29
CLN3-236ENST00000568558 TMOD1P28289 359 aa16.86■□□□□ 0.29
CLN3-236ENST00000568558 USP11P51784 963 aa16.86■□□□□ 0.29
CLN3-236ENST00000568558 UGCGQ16739 394 aa16.86■□□□□ 0.29
CLN3-236ENST00000568558 HERC4Q5GLZ8 1057 aaPredicted RBP16.86■□□□□ 0.29
CLN3-236ENST00000568558 SLC5A5Q92911 643 aa16.86■□□□□ 0.29
CLN3-236ENST00000568558 RIT2Q99578 217 aa16.86■□□□□ 0.29
CLN3-236ENST00000568558 TMEM117Q9H0C3 514 aa16.86■□□□□ 0.29
CLN3-236ENST00000568558 ADAMTS10Q9H324 1103 aa16.86■□□□□ 0.29
CLN3-236ENST00000568558 SH3GLB2Q9NR46 395 aa16.86■□□□□ 0.29
CLN3-236ENST00000568558 NRBP2Q9NSY0 501 aa16.86■□□□□ 0.29
CLN3-236ENST00000568558 MUTYHQ9UIF7 546 aa16.86■□□□□ 0.29
CLN3-236ENST00000568558 FSCN2O14926 492 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 CHMP2AO43633 222 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 GAS7O60861 476 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 REC8O95072 547 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 EIF4BP23588 611 aaKnown RBP16.85■□□□□ 0.29
CLN3-236ENST00000568558 SFNP31947 248 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 GPC3P51654 580 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 NLRP5P59047 1200 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 ERVFC1P60507 584 aa16.85■□□□□ 0.29
CLN3-236ENST00000568558 DUSP6Q16828 381 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms