RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 FAM184AQ8NB25 1140 aa15.7■□□□□ 0.1
CLN3-235ENST00000568497 ASIC4Q96FT7 647 aa15.7■□□□□ 0.1
CLN3-235ENST00000568497 RNPEPQ9H4A4 650 aa15.7■□□□□ 0.1
CLN3-235ENST00000568497 JPH1Q9HDC5 661 aaPredicted RBP15.7■□□□□ 0.1
CLN3-235ENST00000568497 LOC101059915A0A1B0GWI6 518 aaPredicted RBP15.69■□□□□ 0.1
CLN3-235ENST00000568497 IPO5O00410 1097 aaKnown RBP15.69■□□□□ 0.1
CLN3-235ENST00000568497 GALR2O43603 387 aaPredicted RBP15.69■□□□□ 0.1
CLN3-235ENST00000568497 PDGFBP01127 241 aaPredicted RBP15.69■□□□□ 0.1
CLN3-235ENST00000568497 NUBP1P53384 320 aa15.69■□□□□ 0.1
CLN3-235ENST00000568497 KRT25Q7Z3Z0 450 aa15.69■□□□□ 0.1
CLN3-235ENST00000568497 POTEDQ86YR6 584 aa15.69■□□□□ 0.1
CLN3-235ENST00000568497 SMRP1Q8NCR6 262 aa15.69■□□□□ 0.1
CLN3-235ENST00000568497 TRAPPC12Q8WVT3 735 aa15.69■□□□□ 0.1
CLN3-235ENST00000568497 WASF1Q92558 559 aa15.69■□□□□ 0.1
CLN3-235ENST00000568497 NKD2Q969F2 451 aaPredicted RBP15.69■□□□□ 0.1
CLN3-235ENST00000568497 MSLNLQ96KJ4 702 aa15.69■□□□□ 0.1
CLN3-235ENST00000568497 SDF4Q9BRK5 362 aa15.69■□□□□ 0.1
CLN3-235ENST00000568497 LLPHQ9BRT6 129 aaKnown RBP15.69■□□□□ 0.1
CLN3-235ENST00000568497 SETD4Q9NVD3 440 aa15.69■□□□□ 0.1
CLN3-235ENST00000568497 SLC9A2Q9UBY0 812 aa15.69■□□□□ 0.1
CLN3-235ENST00000568497 USP15Q9Y4E8 981 aaPredicted RBP15.69■□□□□ 0.1
CLN3-235ENST00000568497 DCHS1Q96JQ0 3298 aa15.69■□□□□ 0.1
CLN3-235ENST00000568497 CCNT1O60563 726 aaKnown RBP15.68■□□□□ 0.1
CLN3-235ENST00000568497 SMIM10L2AP0DMW4 78 aa15.68■□□□□ 0.1
CLN3-235ENST00000568497 SMIM10L2BP0DMW5 78 aa15.68■□□□□ 0.1
CLN3-235ENST00000568497 HOXD8P13378 290 aaPredicted RBP15.68■□□□□ 0.1
CLN3-235ENST00000568497 XBP1P17861 261 aa15.68■□□□□ 0.1
CLN3-235ENST00000568497 CIITAP33076 1130 aa15.68■□□□□ 0.1
CLN3-235ENST00000568497 NBL1P41271 181 aa15.68■□□□□ 0.1
CLN3-235ENST00000568497 IGBP1P78318 339 aa15.68■□□□□ 0.1
CLN3-235ENST00000568497 TRIM29Q14134 588 aa15.68■□□□□ 0.1
CLN3-235ENST00000568497 SERINC5Q86VE9 423 aa15.68■□□□□ 0.1
CLN3-235ENST00000568497 ADSSL1Q8N142 457 aa15.68■□□□□ 0.1
CLN3-235ENST00000568497 SENP7Q9BQF6 1050 aa15.68■□□□□ 0.1
CLN3-235ENST00000568497 PHF7Q9BWX1 381 aaPredicted RBP15.68■□□□□ 0.1
CLN3-235ENST00000568497 OSBPL7Q9BZF2 842 aa15.68■□□□□ 0.1
CLN3-235ENST00000568497 UNC45AQ9H3U1 944 aa15.68■□□□□ 0.1
CLN3-235ENST00000568497 DDX25Q9UHL0 483 aaKnown RBP15.68■□□□□ 0.1
CLN3-235ENST00000568497 BARX2Q9UMQ3 279 aaPredicted RBP15.68■□□□□ 0.1
CLN3-235ENST00000568497 ADGRA3Q8IWK6 1321 aa15.68■□□□□ 0.1
CLN3-235ENST00000568497 H3BRB1 525 aa15.67■□□□□ 0.1
CLN3-235ENST00000568497 PPFIA4O75335 1185 aa15.67■□□□□ 0.1
CLN3-235ENST00000568497 LINC00271P0C7V0 271 aa15.67■□□□□ 0.1
CLN3-235ENST00000568497 UGCGQ16739 394 aa15.67■□□□□ 0.1
CLN3-235ENST00000568497 CCDC60Q8IWA6 550 aaPredicted RBP15.67■□□□□ 0.1
CLN3-235ENST00000568497 SEPT1Q8WYJ6 367 aa15.67■□□□□ 0.1
CLN3-235ENST00000568497 GLG1Q92896 1179 aa15.67■□□□□ 0.1
CLN3-235ENST00000568497 CDHR1Q96JP9 859 aa15.67■□□□□ 0.1
CLN3-235ENST00000568497 TUT1Q9H6E5 874 aaKnown RBP15.67■□□□□ 0.1
CLN3-235ENST00000568497 CLEC1BQ9P126 229 aa15.67■□□□□ 0.1
CLN3-235ENST00000568497 A0A087WWV3 80 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 TMEM150BA6NC51 233 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 BACH1O14867 736 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 TREHO43280 583 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 NRIP1P48552 1158 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 COASYQ13057 564 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 BTG3Q14201 252 aaPredicted RBP15.66■□□□□ 0.1
CLN3-235ENST00000568497 ZNF174Q15697 407 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 PTPN21Q16825 1174 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 MCTP1Q6DN14 999 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 GALNT17Q6IS24 598 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 SWSAP1Q6NVH7 229 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 RUFY4Q6ZNE9 571 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 FRMD5Q7Z6J6 570 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 ADGRD2Q7Z7M1 963 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 NEK8Q86SG6 692 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 RBM23Q86U06 439 aaKnown RBP15.66■□□□□ 0.1
CLN3-235ENST00000568497 FBXO18Q8NFZ0 1043 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 SLC5A5Q92911 643 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 ATP6V0A1Q93050 837 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 SH2D3AQ9BRG2 576 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 TMEM60Q9H2L4 133 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 SMC3Q9UQE7 1217 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 NFASCO94856 1347 aa15.66■□□□□ 0.1
CLN3-235ENST00000568497 MED19A0JLT2 244 aaPredicted RBP15.65■□□□□ 0.1
CLN3-235ENST00000568497 C17orf102A2RUQ5 167 aa15.65■□□□□ 0.1
CLN3-235ENST00000568497 EML1O00423 815 aa15.65■□□□□ 0.1
CLN3-235ENST00000568497 KRT37O76014 449 aa15.65■□□□□ 0.1
CLN3-235ENST00000568497 ATP4AP20648 1035 aa15.65■□□□□ 0.1
CLN3-235ENST00000568497 USP11P51784 963 aa15.65■□□□□ 0.1
CLN3-235ENST00000568497 HMGN5P82970 282 aaKnown RBP15.65■□□□□ 0.1
CLN3-235ENST00000568497 LRCH2Q5VUJ6 765 aa15.65■□□□□ 0.1
CLN3-235ENST00000568497 MCTP2Q6DN12 878 aa15.65■□□□□ 0.1
CLN3-235ENST00000568497 NIPA1Q7RTP0 329 aa15.65■□□□□ 0.1
CLN3-235ENST00000568497 EFHBQ8N7U6 833 aa15.65■□□□□ 0.1
CLN3-235ENST00000568497 ETNPPLQ8TBG4 499 aa15.65■□□□□ 0.1
CLN3-235ENST00000568497 HAS1Q92839 578 aa15.65■□□□□ 0.1
CLN3-235ENST00000568497 APBB2Q92870 758 aa15.65■□□□□ 0.1
CLN3-235ENST00000568497 RIPOR3Q96MK2 946 aa15.65■□□□□ 0.1
CLN3-235ENST00000568497 CYP3A7-CYP3A51PA0A087WV96 503 aa15.64■□□□□ 0.09
CLN3-235ENST00000568497 GAS7O60861 476 aa15.64■□□□□ 0.09
CLN3-235ENST00000568497 CAND2O75155 1236 aa15.64■□□□□ 0.09
CLN3-235ENST00000568497 SP100P23497 879 aaPredicted RBP15.64■□□□□ 0.09
CLN3-235ENST00000568497 CYP3A7P24462 503 aa15.64■□□□□ 0.09
CLN3-235ENST00000568497 MCM7P33993 719 aa15.64■□□□□ 0.09
CLN3-235ENST00000568497 PLCB4Q15147 1175 aa15.64■□□□□ 0.09
CLN3-235ENST00000568497 Q4G0T1 1027 aa15.64■□□□□ 0.09
CLN3-235ENST00000568497 FOXD4L5Q5VV16 416 aaPredicted RBP15.64■□□□□ 0.09
CLN3-235ENST00000568497 ABHD15Q6UXT9 468 aa15.64■□□□□ 0.09
CLN3-235ENST00000568497 FOXD4L4Q8WXT5 416 aaPredicted RBP15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 57.5 ms