RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 NRCAMQ92823 1304 aa12.86□□□□□ -0.35
CLN3-226ENST00000567160 DNAH14Q0VDD8 3507 aa12.85□□□□□ -0.35
CLN3-226ENST00000567160 CACNA1GO43497 2377 aa12.85□□□□□ -0.35
CLN3-226ENST00000567160 LMNAP02545 664 aaKnown RBP12.85□□□□□ -0.35
CLN3-226ENST00000567160 CCND2P30279 289 aa12.85□□□□□ -0.35
CLN3-226ENST00000567160 TECP42680 631 aa12.85□□□□□ -0.35
CLN3-226ENST00000567160 HSD17B4P51659 736 aa12.85□□□□□ -0.35
CLN3-226ENST00000567160 NAPAP54920 295 aa12.85□□□□□ -0.35
CLN3-226ENST00000567160 GUCY1B3Q02153 619 aa12.85□□□□□ -0.35
CLN3-226ENST00000567160 SPOUT1Q5T280 376 aaKnown RBP12.85□□□□□ -0.35
CLN3-226ENST00000567160 ANKRD54Q6NXT1 300 aa12.85□□□□□ -0.35
CLN3-226ENST00000567160 NECTIN4Q96NY8 510 aa12.85□□□□□ -0.35
CLN3-226ENST00000567160 IPO9Q96P70 1041 aaKnown RBP12.85□□□□□ -0.35
CLN3-226ENST00000567160 S1PR5Q9H228 398 aa12.85□□□□□ -0.35
CLN3-226ENST00000567160 BARHL2Q9NY43 387 aa12.85□□□□□ -0.35
CLN3-226ENST00000567160 KIF3AQ9Y496 699 aa12.85□□□□□ -0.35
CLN3-226ENST00000567160 KMT2BQ9UMN6 2715 aaPredicted RBP12.85□□□□□ -0.35
CLN3-226ENST00000567160 RPLP2P05387 115 aaKnown RBP12.84□□□□□ -0.35
CLN3-226ENST00000567160 ADAM17P78536 824 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 RBM10P98175 930 aaKnown RBP12.84□□□□□ -0.35
CLN3-226ENST00000567160 SP2Q02086 613 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 MGAT3Q09327 533 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 NEDD9Q14511 834 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 GNPTABQ3T906 1256 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 TPRNQ4KMQ1 711 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 FBXO47Q5MNV8 452 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 CES5AQ6NT32 575 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 TYW1BQ6NUM6 668 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 METTL7BQ6UX53 244 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 VSIG10LQ86VR7 867 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 VN1R2Q8NFZ6 395 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 RASGRP4Q8TDF6 673 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 C8orf76Q96K31 380 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 RNF216Q9NWF9 866 aaPredicted RBP12.84□□□□□ -0.35
CLN3-226ENST00000567160 LRFN2Q9ULH4 789 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 KCNJ14Q9UNX9 436 aa12.84□□□□□ -0.35
CLN3-226ENST00000567160 hCG_1984214I3L0E3 225 aa12.83□□□□□ -0.36
CLN3-226ENST00000567160 XBP1P17861 261 aa12.83□□□□□ -0.36
CLN3-226ENST00000567160 NLRP5P59047 1200 aa12.83□□□□□ -0.36
CLN3-226ENST00000567160 TRAF1Q13077 416 aa12.83□□□□□ -0.36
CLN3-226ENST00000567160 TRIM29Q14134 588 aa12.83□□□□□ -0.36
CLN3-226ENST00000567160 PGM5Q15124 567 aa12.83□□□□□ -0.36
CLN3-226ENST00000567160 ANGPT1Q15389 498 aa12.83□□□□□ -0.36
CLN3-226ENST00000567160 SAMD3Q8N6K7 520 aa12.83□□□□□ -0.36
CLN3-226ENST00000567160 ZNF713Q8N859 430 aaPredicted RBP12.83□□□□□ -0.36
CLN3-226ENST00000567160 FLCNQ8NFG4 579 aa12.83□□□□□ -0.36
CLN3-226ENST00000567160 CCDC148Q8NFR7 591 aa12.83□□□□□ -0.36
CLN3-226ENST00000567160 CNTNAP3BQ96NU0 1288 aa12.83□□□□□ -0.36
CLN3-226ENST00000567160 CNTNAP3Q9BZ76 1288 aa12.83□□□□□ -0.36
CLN3-226ENST00000567160 ACACBO00763 2458 aa12.83□□□□□ -0.36
CLN3-226ENST00000567160 SMCO2A6NFE2 343 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 C2CD4DB7Z1M9 353 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 H3BQV1 296 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 FGF18O76093 207 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 ADCY7P51828 1080 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 GHRHRQ02643 423 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 ITIH3Q06033 890 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 LARP1BQ659C4 914 aaKnown RBP12.82□□□□□ -0.36
CLN3-226ENST00000567160 PPP1R18Q6NYC8 613 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 SYCE2Q6PIF2 218 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 CCDC105Q8IYK2 499 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 THNSL1Q8IYQ7 743 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 KIAA2013Q8IYS2 634 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 CRIPAKQ8N1N5 446 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 TDRD5Q8NAT2 981 aaKnown RBP12.82□□□□□ -0.36
CLN3-226ENST00000567160 CCDC12Q8WUD4 166 aaPredicted RBP12.82□□□□□ -0.36
CLN3-226ENST00000567160 CASP10Q92851 521 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 GPR20Q99678 358 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 HINFPQ9BQA5 517 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 RTP3Q9BQQ7 232 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 APOL5Q9BWW9 433 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 SH3GLB2Q9NR46 395 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 TMEM260Q9NX78 707 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 PUF60Q9UHX1 559 aaKnown RBP12.82□□□□□ -0.36
CLN3-226ENST00000567160 CDY2AQ9Y6F7 541 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 SQORQ9Y6N5 450 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 CEP250Q9BV73 2442 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 TCHHQ07283 1943 aa12.82□□□□□ -0.36
CLN3-226ENST00000567160 DOCK5Q9H7D0 1870 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 VPS37CA5D8V6 355 aaPredicted RBP12.81□□□□□ -0.36
CLN3-226ENST00000567160 M0QZ92 97 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 OPLAHO14841 1288 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 ADAMTS3O15072 1205 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 STAM2O75886 525 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 AOC1P19801 751 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 PDCP20941 246 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 CD52P31358 61 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 KCNC3Q14003 757 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 UTP14CQ5TAP6 766 aaKnown RBP12.81□□□□□ -0.36
CLN3-226ENST00000567160 IER5Q5VY09 327 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 LLGL2Q6P1M3 1020 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 RUFY4Q6ZNE9 571 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 FAM43BQ6ZT52 329 aaPredicted RBP12.81□□□□□ -0.36
CLN3-226ENST00000567160 TRIM50Q86XT4 487 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 PLCD3Q8N3E9 789 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 LINC01599Q8WXQ3 324 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 PHF20Q9BVI0 1012 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 PSTPIP2Q9H939 334 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 C6orf50Q9HD87 102 aa12.81□□□□□ -0.36
CLN3-226ENST00000567160 TUBE1Q9UJT0 475 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms