RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 XIRP2A4UGR9 3374 aa16.83■□□□□ 0.28
CLN3-222ENST00000566083 CYP3A7-CYP3A51PA0A087WV96 503 aa16.82■□□□□ 0.28
CLN3-222ENST00000566083 H3BQ06 376 aaPredicted RBP16.82■□□□□ 0.28
CLN3-222ENST00000566083 ALADP13716 330 aa16.82■□□□□ 0.28
CLN3-222ENST00000566083 ZSCAN20P17040 1043 aaPredicted RBP16.82■□□□□ 0.28
CLN3-222ENST00000566083 CYP3A7P24462 503 aa16.82■□□□□ 0.28
CLN3-222ENST00000566083 SSTR3P32745 418 aaPredicted RBP16.82■□□□□ 0.28
CLN3-222ENST00000566083 KIZQ2M2Z5 673 aa16.82■□□□□ 0.28
CLN3-222ENST00000566083 CTC1Q2NKJ3 1217 aa16.82■□□□□ 0.28
CLN3-222ENST00000566083 TMEM31Q5JXX7 168 aa16.82■□□□□ 0.28
CLN3-222ENST00000566083 EFCAB12Q6NXP0 572 aa16.82■□□□□ 0.28
CLN3-222ENST00000566083 BLIDQ8IZY5 108 aa16.82■□□□□ 0.28
CLN3-222ENST00000566083 TMEM40Q8WWA1 233 aa16.82■□□□□ 0.28
CLN3-222ENST00000566083 ATP6V0A4Q9HBG4 840 aa16.82■□□□□ 0.28
CLN3-222ENST00000566083 TMEM161AQ9NX61 479 aa16.82■□□□□ 0.28
CLN3-222ENST00000566083 AKT3Q9Y243 479 aa16.82■□□□□ 0.28
CLN3-222ENST00000566083 C9IYK1 514 aa16.81■□□□□ 0.28
CLN3-222ENST00000566083 PI4K2BG5E9Z4 385 aa16.81■□□□□ 0.28
CLN3-222ENST00000566083 EIF5BO60841 1220 aaKnown RBP16.81■□□□□ 0.28
CLN3-222ENST00000566083 GPR37L1O60883 481 aa16.81■□□□□ 0.28
CLN3-222ENST00000566083 GPR32O75388 356 aa16.81■□□□□ 0.28
CLN3-222ENST00000566083 ITGB1P05556 798 aa16.81■□□□□ 0.28
CLN3-222ENST00000566083 IL9P15248 144 aa16.81■□□□□ 0.28
CLN3-222ENST00000566083 EIF4BP23588 611 aaKnown RBP16.81■□□□□ 0.28
CLN3-222ENST00000566083 FAM189BP81408 668 aa16.81■□□□□ 0.28
CLN3-222ENST00000566083 TBC1D8BQ0IIM8 1120 aa16.81■□□□□ 0.28
CLN3-222ENST00000566083 PDE12Q6L8Q7 609 aaKnown RBP16.81■□□□□ 0.28
CLN3-222ENST00000566083 TRMT1LQ7Z2T5 733 aaKnown RBP16.81■□□□□ 0.28
CLN3-222ENST00000566083 KLHL23Q8NBE8 558 aa16.81■□□□□ 0.28
CLN3-222ENST00000566083 SPPL3Q8TCT6 385 aa16.81■□□□□ 0.28
CLN3-222ENST00000566083 UIMC1Q96RL1 719 aa16.81■□□□□ 0.28
CLN3-222ENST00000566083 POP1Q99575 1024 aaKnown RBP16.81■□□□□ 0.28
CLN3-222ENST00000566083 OSMRQ99650 979 aa16.81■□□□□ 0.28
CLN3-222ENST00000566083 CDHR5Q9HBB8 845 aa16.81■□□□□ 0.28
CLN3-222ENST00000566083 ALG13Q9NP73 1137 aaKnown RBP16.81■□□□□ 0.28
CLN3-222ENST00000566083 PDRG1Q9NUG6 133 aa16.81■□□□□ 0.28
CLN3-222ENST00000566083 ARIH1Q9Y4X5 557 aaPredicted RBP16.81■□□□□ 0.28
CLN3-222ENST00000566083 RBAK-RBAKDNI3L0D1 243 aa16.8■□□□□ 0.28
CLN3-222ENST00000566083 ADAMTS3O15072 1205 aa16.8■□□□□ 0.28
CLN3-222ENST00000566083 PPFIA3O75145 1194 aa16.8■□□□□ 0.28
CLN3-222ENST00000566083 PSMD10O75832 226 aa16.8■□□□□ 0.28
CLN3-222ENST00000566083 VTNP04004 478 aa16.8■□□□□ 0.28
CLN3-222ENST00000566083 NLRP11P59045 1033 aaKnown RBP16.8■□□□□ 0.28
CLN3-222ENST00000566083 PRKCEQ02156 737 aa16.8■□□□□ 0.28
CLN3-222ENST00000566083 HYAL1Q12794 435 aa16.8■□□□□ 0.28
CLN3-222ENST00000566083 NONOQ15233 471 aaKnown RBP eCLIP16.8■□□□□ 0.28
CLN3-222ENST00000566083 PAN2Q504Q3 1202 aaKnown RBP16.8■□□□□ 0.28
CLN3-222ENST00000566083 XKR3Q5GH77 459 aa16.8■□□□□ 0.28
CLN3-222ENST00000566083 SPOUT1Q5T280 376 aaKnown RBP16.8■□□□□ 0.28
CLN3-222ENST00000566083 MIER3Q7Z3K6 550 aa16.8■□□□□ 0.28
CLN3-222ENST00000566083 KRT25Q7Z3Z0 450 aa16.8■□□□□ 0.28
CLN3-222ENST00000566083 FAM228AQ86W67 206 aa16.8■□□□□ 0.28
CLN3-222ENST00000566083 RSPH1Q8WYR4 309 aa16.8■□□□□ 0.28
CLN3-222ENST00000566083 UPF3BQ9BZI7 483 aaKnown RBP16.8■□□□□ 0.28
CLN3-222ENST00000566083 EPHX3Q9H6B9 360 aa16.8■□□□□ 0.28
CLN3-222ENST00000566083 TBKBP1A7MCY6 615 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 DKC1O60832 514 aaKnown RBP eCLIP16.79■□□□□ 0.28
CLN3-222ENST00000566083 DNM2P50570 870 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 LINC01465Q8N7H1 131 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 POF1BQ8WVV4 589 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 NAP1L4Q99733 375 aaKnown RBP16.79■□□□□ 0.28
CLN3-222ENST00000566083 JPH2Q9BR39 696 aaPredicted RBP16.79■□□□□ 0.28
CLN3-222ENST00000566083 NIFKQ9BYG3 293 aaKnown RBP16.79■□□□□ 0.28
CLN3-222ENST00000566083 HCN4Q9Y3Q4 1203 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 CARNS1A5YM72 827 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 CHMP2AO43633 222 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 ZNF862O60290 1169 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 MGEA5O60502 916 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 GCFC2P16383 781 aaKnown RBP16.79■□□□□ 0.28
CLN3-222ENST00000566083 LAG3P18627 525 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 LTBRP36941 435 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 CLCN3P51790 818 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 ADAM15Q13444 863 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 CAMK1Q14012 370 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 ANKRD1Q15327 319 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 ADHFE1Q8IWW8 467 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 EXOC8Q8IYI6 725 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 ABI1Q8IZP0 508 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 MBOAT7Q96N66 472 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 SCLT1Q96NL6 688 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 LRFN3Q9BTN0 628 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 INO80BQ9C086 356 aaPredicted RBP16.79■□□□□ 0.28
CLN3-222ENST00000566083 TMEM117Q9H0C3 514 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 ADAMTS10Q9H324 1103 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 UNC45AQ9H3U1 944 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 DACT1Q9NYF0 836 aa16.79■□□□□ 0.28
CLN3-222ENST00000566083 PUF60Q9UHX1 559 aaKnown RBP16.79■□□□□ 0.28
CLN3-222ENST00000566083 CCDC194A0A1B0GVG4 234 aa16.78■□□□□ 0.28
CLN3-222ENST00000566083 M0R2N6 131 aa16.78■□□□□ 0.28
CLN3-222ENST00000566083 ANAPC15P60006 121 aa16.78■□□□□ 0.28
CLN3-222ENST00000566083 SMAD4Q13485 552 aaKnown RBP16.78■□□□□ 0.28
CLN3-222ENST00000566083 DSC3Q14574 896 aa16.78■□□□□ 0.28
CLN3-222ENST00000566083 SMAD2Q15796 467 aaKnown RBP16.78■□□□□ 0.28
CLN3-222ENST00000566083 EFHBQ8N7U6 833 aa16.78■□□□□ 0.28
CLN3-222ENST00000566083 MICAL1Q8TDZ2 1067 aa16.78■□□□□ 0.28
CLN3-222ENST00000566083 WASF1Q92558 559 aa16.78■□□□□ 0.28
CLN3-222ENST00000566083 FAM20AQ96MK3 541 aa16.78■□□□□ 0.28
CLN3-222ENST00000566083 CDCA3Q99618 268 aaPredicted RBP16.78■□□□□ 0.28
CLN3-222ENST00000566083 SLKQ9H2G2 1235 aaPredicted RBP16.78■□□□□ 0.28
CLN3-222ENST00000566083 IGFLR1Q9H665 355 aa16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms