RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 STX6O43752 255 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 FGBP02675 491 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 PFKMP08237 780 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 GHRP10912 638 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 RARRES1P49788 294 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 CNKSR3Q6P9H4 555 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 BRAPQ7Z569 592 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 HSCBQ8IWL3 235 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 PIGOQ8TEQ8 1089 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 ZNF668Q96K58 619 aaPredicted RBP11.04□□□□□ -0.64
CLN3-220ENST00000566040 PNMA5Q96PV4 448 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 USP28Q96RU2 1077 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 PPP1R16BQ96T49 567 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 POLR3CQ9BUI4 534 aaPredicted RBP11.04□□□□□ -0.64
CLN3-220ENST00000566040 ERVK-5Q9HDB9 667 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 NOL7Q9UMY1 257 aaKnown RBP11.04□□□□□ -0.64
CLN3-220ENST00000566040 TRPV2Q9Y5S1 764 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 MYO9BQ13459 2157 aa11.04□□□□□ -0.64
CLN3-220ENST00000566040 LCHNA4D1U4 455 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 LINC00271P0C7V0 271 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 MYOGP15173 224 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 RPA1P27694 616 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 CD52P31358 61 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 YWHABP31946 246 aaKnown RBP11.03□□□□□ -0.64
CLN3-220ENST00000566040 GPC3P51654 580 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 RABGGTBP53611 331 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 DSC3Q14574 896 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 SF3A1Q15459 793 aaKnown RBP11.03□□□□□ -0.64
CLN3-220ENST00000566040 KIZQ2M2Z5 673 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 HYIQ5T013 277 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 EFCAB12Q6NXP0 572 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 USP49Q70CQ1 688 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 Q7L0L9 218 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 FAM228AQ86W67 206 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 KSR1Q8IVT5 923 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 CKAP2LQ8IYA6 745 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 RETREG2Q8NC44 543 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 SPRYD3Q8NCJ5 442 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 PBX4Q9BYU1 374 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 CELF4Q9BZC1 486 aaKnown RBP11.03□□□□□ -0.64
CLN3-220ENST00000566040 ZSWIM4Q9H7M6 989 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 TUFT1Q9NNX1 390 aa11.03□□□□□ -0.64
CLN3-220ENST00000566040 BMP2KQ9NSY1 1161 aaPredicted RBP11.03□□□□□ -0.64
CLN3-220ENST00000566040 FBXO2Q9UK22 296 aaPredicted RBP11.03□□□□□ -0.64
CLN3-220ENST00000566040 NOC2LQ9Y3T9 749 aaKnown RBP11.03□□□□□ -0.64
CLN3-220ENST00000566040 DDX11L8A8MPP1 907 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 LAD1O00515 517 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 BAIAP3O94812 1187 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 BAG4O95429 457 aaKnown RBP11.02□□□□□ -0.65
CLN3-220ENST00000566040 EDN1P05305 212 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 PDCP20941 246 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 SMAD3P84022 425 aaKnown RBP11.02□□□□□ -0.65
CLN3-220ENST00000566040 GRB10Q13322 594 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 GNL2Q13823 731 aaKnown RBP11.02□□□□□ -0.65
CLN3-220ENST00000566040 EMC2Q15006 297 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 TMEM266Q2M3C6 531 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 TMEM119Q4V9L6 283 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 TSHZ1Q6ZSZ6 1077 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 TPH2Q8IWU9 490 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 NEK9Q8TD19 979 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 ASAP3Q8TDY4 903 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 BSNDQ8WZ55 320 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 OSMRQ99650 979 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 IFIH1Q9BYX4 1025 aaKnown RBP11.02□□□□□ -0.65
CLN3-220ENST00000566040 MINDY3Q9H8M7 445 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 IFT122Q9HBG6 1241 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 ANKEF1Q9NU02 776 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 TCEAL9Q9UHQ7 104 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 MORC2Q9Y6X9 1032 aaPredicted RBP11.02□□□□□ -0.65
CLN3-220ENST00000566040 ANK1P16157 1881 aa11.02□□□□□ -0.65
CLN3-220ENST00000566040 MAGEB2O15479 319 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 CSDE1O75534 798 aaKnown RBP11.01□□□□□ -0.65
CLN3-220ENST00000566040 PARNO95453 639 aaKnown RBP11.01□□□□□ -0.65
CLN3-220ENST00000566040 NASPP49321 788 aaPredicted RBP11.01□□□□□ -0.65
CLN3-220ENST00000566040 NLRP11P59045 1033 aaKnown RBP11.01□□□□□ -0.65
CLN3-220ENST00000566040 TBC1D8BQ0IIM8 1120 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 MAPK7Q13164 816 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 PDIA5Q14554 519 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 ARL6IP4Q66PJ3 421 aaKnown RBP11.01□□□□□ -0.65
CLN3-220ENST00000566040 RPUSD2Q8IZ73 545 aaKnown RBP11.01□□□□□ -0.65
CLN3-220ENST00000566040 DAW1Q8N136 415 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 NME8Q8N427 588 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 TMEM143Q96AN5 459 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 GUCD1Q96NT3 240 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 GPRC5CQ9NQ84 441 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 NRBP2Q9NSY0 501 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 RNF19AQ9NV58 838 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 DBR1Q9UK59 544 aaKnown RBP11.01□□□□□ -0.65
CLN3-220ENST00000566040 PADI3Q9ULW8 664 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 CEP131Q9UPN4 1083 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 SQORQ9Y6N5 450 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 TDRD15B5MCY1 1934 aaKnown RBP11.01□□□□□ -0.65
CLN3-220ENST00000566040 UNC80Q8N2C7 3258 aa11.01□□□□□ -0.65
CLN3-220ENST00000566040 A0A087X0B3 334 aa11□□□□□ -0.65
CLN3-220ENST00000566040 ABHD14A-ACY1A0A1B0GW23 586 aa11□□□□□ -0.65
CLN3-220ENST00000566040 VWA3AA6NCI4 1184 aa11□□□□□ -0.65
CLN3-220ENST00000566040 EPOPA6NHQ4 379 aa11□□□□□ -0.65
CLN3-220ENST00000566040 E9PMD0 336 aa11□□□□□ -0.65
CLN3-220ENST00000566040 BRD1O95696 1058 aa11□□□□□ -0.65
CLN3-220ENST00000566040 F13A1P00488 732 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms