RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 TBX3O15119 743 aa20.67■□□□□ 0.9
CLN3-214ENST00000565140 CRYBB1P53674 252 aaPredicted RBP20.67■□□□□ 0.9
CLN3-214ENST00000565140 NFX1Q12986 1120 aaKnown RBP20.67■□□□□ 0.9
CLN3-214ENST00000565140 TRIM29Q14134 588 aa20.67■□□□□ 0.9
CLN3-214ENST00000565140 XKR3Q5GH77 459 aa20.67■□□□□ 0.9
CLN3-214ENST00000565140 CRIPAKQ8N1N5 446 aa20.67■□□□□ 0.9
CLN3-214ENST00000565140 OSMRQ99650 979 aa20.67■□□□□ 0.9
CLN3-214ENST00000565140 LLPHQ9BRT6 129 aaKnown RBP20.67■□□□□ 0.9
CLN3-214ENST00000565140 FTHL17Q9BXU8 183 aa20.67■□□□□ 0.9
CLN3-214ENST00000565140 TSPYL2Q9H2G4 693 aaPredicted RBP20.67■□□□□ 0.9
CLN3-214ENST00000565140 ERVK-5Q9HDB9 667 aa20.67■□□□□ 0.9
CLN3-214ENST00000565140 SEPT9Q9UHD8 586 aaPredicted RBP20.67■□□□□ 0.9
CLN3-214ENST00000565140 KIAA1671Q9BY89 1806 aa20.67■□□□□ 0.9
CLN3-214ENST00000565140 DDX11L8A8MPP1 907 aa20.66■□□□□ 0.9
CLN3-214ENST00000565140 DLL1O00548 723 aa20.66■□□□□ 0.9
CLN3-214ENST00000565140 GTPBP6O43824 516 aaPredicted RBP20.66■□□□□ 0.9
CLN3-214ENST00000565140 MGEA5O60502 916 aa20.66■□□□□ 0.9
CLN3-214ENST00000565140 RPS6KA5O75582 802 aa20.66■□□□□ 0.9
CLN3-214ENST00000565140 NLRP11P59045 1033 aaKnown RBP20.66■□□□□ 0.9
CLN3-214ENST00000565140 MTERF2Q49AM1 385 aa20.66■□□□□ 0.9
CLN3-214ENST00000565140 ANO5Q75V66 913 aa20.66■□□□□ 0.9
CLN3-214ENST00000565140 ADAMTS10Q9H324 1103 aa20.66■□□□□ 0.9
CLN3-214ENST00000565140 RC3H2Q9HBD1 1191 aaKnown RBP20.66■□□□□ 0.9
CLN3-214ENST00000565140 WRAP73Q9P2S5 460 aaPredicted RBP20.66■□□□□ 0.9
CLN3-214ENST00000565140 ST3GAL5Q9UNP4 418 aa20.66■□□□□ 0.9
CLN3-214ENST00000565140 AKT3Q9Y243 479 aa20.66■□□□□ 0.9
CLN3-214ENST00000565140 FNDC1Q4ZHG4 1894 aaPredicted RBP20.65■□□□□ 0.9
CLN3-214ENST00000565140 ARID2Q68CP9 1835 aa20.65■□□□□ 0.9
CLN3-214ENST00000565140 MARCH6O60337 910 aa20.65■□□□□ 0.9
CLN3-214ENST00000565140 PSMC5P62195 406 aa20.65■□□□□ 0.9
CLN3-214ENST00000565140 SPIRE1Q08AE8 756 aa20.65■□□□□ 0.9
CLN3-214ENST00000565140 TBC1D8BQ0IIM8 1120 aa20.65■□□□□ 0.9
CLN3-214ENST00000565140 DRP2Q13474 957 aa20.65■□□□□ 0.9
CLN3-214ENST00000565140 EPC2Q52LR7 807 aa20.65■□□□□ 0.9
CLN3-214ENST00000565140 FAM228AQ86W67 206 aa20.65■□□□□ 0.9
CLN3-214ENST00000565140 FBXO22Q8NEZ5 403 aa20.65■□□□□ 0.9
CLN3-214ENST00000565140 ZNF689Q96CS4 500 aaPredicted RBP20.65■□□□□ 0.9
CLN3-214ENST00000565140 ZNF668Q96K58 619 aaPredicted RBP20.65■□□□□ 0.9
CLN3-214ENST00000565140 SH2B1Q9NRF2 756 aaPredicted RBP20.65■□□□□ 0.9
CLN3-214ENST00000565140 ATG2AQ2TAZ0 1938 aa20.65■□□□□ 0.9
CLN3-214ENST00000565140 DGKIO75912 1065 aa20.64■□□□□ 0.89
CLN3-214ENST00000565140 TMOD1P28289 359 aa20.64■□□□□ 0.89
CLN3-214ENST00000565140 QARSP47897 775 aaKnown RBP20.64■□□□□ 0.89
CLN3-214ENST00000565140 SLFN12Q8IYM2 578 aa20.64■□□□□ 0.89
CLN3-214ENST00000565140 C8orf76Q96K31 380 aa20.64■□□□□ 0.89
CLN3-214ENST00000565140 MAP7D2Q96T17 732 aa20.64■□□□□ 0.89
CLN3-214ENST00000565140 RGL1Q9NZL6 768 aa20.64■□□□□ 0.89
CLN3-214ENST00000565140 NCOR1O75376 2440 aa20.63■□□□□ 0.89
CLN3-214ENST00000565140 IGKV6-21A0A0C4DH24 114 aa20.63■□□□□ 0.89
CLN3-214ENST00000565140 GPR182O15218 404 aa20.63■□□□□ 0.89
CLN3-214ENST00000565140 BAG4O95429 457 aaKnown RBP20.63■□□□□ 0.89
CLN3-214ENST00000565140 P4HBP07237 508 aaKnown RBP20.63■□□□□ 0.89
CLN3-214ENST00000565140 LINC00271P0C7V0 271 aa20.63■□□□□ 0.89
CLN3-214ENST00000565140 RABEP1Q15276 862 aa20.63■□□□□ 0.89
CLN3-214ENST00000565140 EPHA7Q15375 998 aa20.63■□□□□ 0.89
CLN3-214ENST00000565140 PLA2G4FQ68DD2 849 aa20.63■□□□□ 0.89
CLN3-214ENST00000565140 NCAPH2Q6IBW4 605 aa20.63■□□□□ 0.89
CLN3-214ENST00000565140 TMEM192Q8IY95 271 aa20.63■□□□□ 0.89
CLN3-214ENST00000565140 FIBCD1Q8N539 461 aa20.63■□□□□ 0.89
CLN3-214ENST00000565140 ZNF579Q8NAF0 562 aaKnown RBP20.63■□□□□ 0.89
CLN3-214ENST00000565140 ADAM2Q99965 735 aa20.63■□□□□ 0.89
CLN3-214ENST00000565140 COL25A1Q9BXS0 654 aaPredicted RBP20.63■□□□□ 0.89
CLN3-214ENST00000565140 ADGRA3Q8IWK6 1321 aa20.62■□□□□ 0.89
CLN3-214ENST00000565140 GPC3P51654 580 aa20.62■□□□□ 0.89
CLN3-214ENST00000565140 NPEPPSP55786 919 aa20.62■□□□□ 0.89
CLN3-214ENST00000565140 SAFBQ15424 915 aaKnown RBP eCLIP20.62■□□□□ 0.89
CLN3-214ENST00000565140 CALCRLQ16602 461 aa20.62■□□□□ 0.89
CLN3-214ENST00000565140 NPAS4Q8IUM7 802 aa20.62■□□□□ 0.89
CLN3-214ENST00000565140 FBXO18Q8NFZ0 1043 aa20.62■□□□□ 0.89
CLN3-214ENST00000565140 DYDC2Q96IM9 177 aa20.62■□□□□ 0.89
CLN3-214ENST00000565140 SAMD11Q96NU1 681 aa20.62■□□□□ 0.89
CLN3-214ENST00000565140 RGS18Q9NS28 235 aa20.62■□□□□ 0.89
CLN3-214ENST00000565140 LMCD1Q9NZU5 365 aa20.62■□□□□ 0.89
CLN3-214ENST00000565140 TCF20Q9UGU0 1960 aaKnown RBP20.62■□□□□ 0.89
CLN3-214ENST00000565140 MAFO75444 373 aaPredicted RBP20.61■□□□□ 0.89
CLN3-214ENST00000565140 IBSPP21815 317 aaPredicted RBP20.61■□□□□ 0.89
CLN3-214ENST00000565140 EIF4BP23588 611 aaKnown RBP20.61■□□□□ 0.89
CLN3-214ENST00000565140 GATMP50440 423 aa20.61■□□□□ 0.89
CLN3-214ENST00000565140 HMGN5P82970 282 aaKnown RBP20.61■□□□□ 0.89
CLN3-214ENST00000565140 DSC3Q14574 896 aa20.61■□□□□ 0.89
CLN3-214ENST00000565140 ODR4Q5SWX8 454 aa20.61■□□□□ 0.89
CLN3-214ENST00000565140 MTMR9Q96QG7 549 aa20.61■□□□□ 0.89
CLN3-214ENST00000565140 LXNQ9BS40 222 aa20.61■□□□□ 0.89
CLN3-214ENST00000565140 TMEM60Q9H2L4 133 aa20.61■□□□□ 0.89
CLN3-214ENST00000565140 CYP26B1Q9NR63 512 aa20.61■□□□□ 0.89
CLN3-214ENST00000565140 THEGQ9P2T0 379 aa20.61■□□□□ 0.89
CLN3-214ENST00000565140 PCDHA12Q9UN75 941 aa20.61■□□□□ 0.89
CLN3-214ENST00000565140 BDP1A6H8Y1 2624 aa20.61■□□□□ 0.89
CLN3-214ENST00000565140 DENND3A2RUS2 1198 aa20.6■□□□□ 0.89
CLN3-214ENST00000565140 C9IYK1 514 aa20.6■□□□□ 0.89
CLN3-214ENST00000565140 H3BNC9 293 aa20.6■□□□□ 0.89
CLN3-214ENST00000565140 ZBTB39O15060 712 aa20.6■□□□□ 0.89
CLN3-214ENST00000565140 NEMFO60524 1076 aa20.6■□□□□ 0.89
CLN3-214ENST00000565140 SLITRK3O94933 977 aa20.6■□□□□ 0.89
CLN3-214ENST00000565140 CD2BP2O95400 341 aaKnown RBP20.6■□□□□ 0.89
CLN3-214ENST00000565140 ATP2B1P20020 1258 aa20.6■□□□□ 0.89
CLN3-214ENST00000565140 TXKP42681 527 aa20.6■□□□□ 0.89
CLN3-214ENST00000565140 SARSP49591 514 aaKnown RBP20.6■□□□□ 0.89
CLN3-214ENST00000565140 GPM6BQ13491 265 aa20.6■□□□□ 0.89
CLN3-214ENST00000565140 BTG3Q14201 252 aaPredicted RBP20.6■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms