RNA–Protein interactions for RNA: ENST00000564994.5

VPS39-208, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-208ENST00000564994 MAGEB2O15479 319 aa12.21□□□□□ -0.45
VPS39-208ENST00000564994 CTNNB1P35222 781 aa12.21□□□□□ -0.45
VPS39-208ENST00000564994 BMPR1AP36894 532 aa12.21□□□□□ -0.45
VPS39-208ENST00000564994 GATMP50440 423 aa12.21□□□□□ -0.45
VPS39-208ENST00000564994 CRYBB1P53674 252 aaPredicted RBP12.21□□□□□ -0.45
VPS39-208ENST00000564994 ANKRD1Q15327 319 aa12.21□□□□□ -0.45
VPS39-208ENST00000564994 TARBP2Q15633 366 aaKnown RBP12.21□□□□□ -0.45
VPS39-208ENST00000564994 EARS2Q5JPH6 523 aaKnown RBP12.21□□□□□ -0.45
VPS39-208ENST00000564994 EFCAB12Q6NXP0 572 aa12.21□□□□□ -0.45
VPS39-208ENST00000564994 MIER3Q7Z3K6 550 aa12.21□□□□□ -0.45
VPS39-208ENST00000564994 KRT25Q7Z3Z0 450 aa12.21□□□□□ -0.45
VPS39-208ENST00000564994 FAM228AQ86W67 206 aa12.21□□□□□ -0.45
VPS39-208ENST00000564994 LRRC71Q8N4P6 559 aa12.21□□□□□ -0.45
VPS39-208ENST00000564994 CEP89Q96ST8 783 aa12.21□□□□□ -0.45
VPS39-208ENST00000564994 NRBP2Q9NSY0 501 aa12.21□□□□□ -0.45
VPS39-208ENST00000564994 ORC3Q9UBD5 711 aaPredicted RBP12.21□□□□□ -0.45
VPS39-208ENST00000564994 DDX25Q9UHL0 483 aaKnown RBP12.21□□□□□ -0.45
VPS39-208ENST00000564994 MRPL42Q9Y6G3 142 aaKnown RBP12.21□□□□□ -0.45
VPS39-208ENST00000564994 FAM205CA6NFA0 338 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 RB1P06400 928 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 IBSPP21815 317 aaPredicted RBP12.2□□□□□ -0.46
VPS39-208ENST00000564994 SARSP49591 514 aaKnown RBP12.2□□□□□ -0.46
VPS39-208ENST00000564994 NLRP11P59045 1033 aaKnown RBP12.2□□□□□ -0.46
VPS39-208ENST00000564994 DRP2Q13474 957 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 PTPROQ16827 1216 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 LETM2Q2VYF4 491 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 PAN2Q504Q3 1202 aaKnown RBP12.2□□□□□ -0.46
VPS39-208ENST00000564994 TCEAL5Q5H9L2 206 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 CMTR2Q8IYT2 770 aaKnown RBP12.2□□□□□ -0.46
VPS39-208ENST00000564994 BANK1Q8NDB2 785 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 IL27Q8NEV9 243 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 RDM1Q8NG50 284 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 GTF3C6Q969F1 213 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 ZNF668Q96K58 619 aaPredicted RBP12.2□□□□□ -0.46
VPS39-208ENST00000564994 ADAM2Q99965 735 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 SH2D3AQ9BRG2 576 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 ADAMTS10Q9H324 1103 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 UBE2ZQ9H832 354 aaPredicted RBP12.2□□□□□ -0.46
VPS39-208ENST00000564994 KCNMB3Q9NPA1 279 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 RGS18Q9NS28 235 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 VAV3Q9UKW4 847 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 AKT3Q9Y243 479 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 C5orf42Q9H799 3197 aa12.2□□□□□ -0.46
VPS39-208ENST00000564994 ARID2Q68CP9 1835 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 CCDC194A0A1B0GVG4 234 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 C9IYK1 514 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 EML1O00423 815 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 GPR182O15218 404 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 STAG3L1P0CL83 205 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 GPC3P51654 580 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 ST3GAL1Q11201 340 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 CAMK1Q14012 370 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 DSC3Q14574 896 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 PPP4R3AQ6IN85 833 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 PIK3AP1Q6ZUJ8 805 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 NEK8Q86SG6 692 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 NSUN7Q8NE18 718 aaKnown RBP12.19□□□□□ -0.46
VPS39-208ENST00000564994 TNFRSF25Q93038 417 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 NIFKQ9BYG3 293 aaKnown RBP12.19□□□□□ -0.46
VPS39-208ENST00000564994 RWDD3Q9Y3V2 267 aa12.19□□□□□ -0.46
VPS39-208ENST00000564994 DENND3A2RUS2 1198 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 JAK2O60674 1132 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 XBP1P17861 261 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 KCNA5P22460 613 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 DNAJB1P25685 340 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 TMOD1P28289 359 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 NEK4P51957 841 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 TBC1D8BQ0IIM8 1120 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 NR5A1Q13285 461 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 COL19A1Q14993 1142 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 MTERF2Q49AM1 385 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 TIGD5Q53EQ6 642 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 XKR3Q5GH77 459 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 FAM102BQ5T8I3 360 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 SLC24A5Q71RS6 500 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.18□□□□□ -0.46
VPS39-208ENST00000564994 HAS1Q92839 578 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 MAP7D2Q96T17 732 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 C11orf84Q9BUA3 381 aaPredicted RBP12.18□□□□□ -0.46
VPS39-208ENST00000564994 PLVAPQ9BX97 442 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 NSUN3Q9H649 340 aaKnown RBP12.18□□□□□ -0.46
VPS39-208ENST00000564994 ALG13Q9NP73 1137 aaKnown RBP12.18□□□□□ -0.46
VPS39-208ENST00000564994 C1orf112Q9NSG2 853 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 WRAP73Q9P2S5 460 aaPredicted RBP12.18□□□□□ -0.46
VPS39-208ENST00000564994 HCSTQ9UBK5 93 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 SEPT9Q9UHD8 586 aaPredicted RBP12.18□□□□□ -0.46
VPS39-208ENST00000564994 LRFN2Q9ULH4 789 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 PLAGL2Q9UPG8 496 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 PCDHB7Q9Y5E2 793 aa12.18□□□□□ -0.46
VPS39-208ENST00000564994 IGKV6-21A0A0C4DH24 114 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 CCNT1O60563 726 aaKnown RBP12.17□□□□□ -0.46
VPS39-208ENST00000564994 CSPG5O95196 566 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 MMP1P03956 469 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 ITGB1P05556 798 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 GCFC2P16383 781 aaKnown RBP12.17□□□□□ -0.46
VPS39-208ENST00000564994 FGFR4P22455 802 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 EIF4BP23588 611 aaKnown RBP12.17□□□□□ -0.46
VPS39-208ENST00000564994 FAM189BP81408 668 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 PPP2R5CQ13362 524 aa12.17□□□□□ -0.46
VPS39-208ENST00000564994 LEXMQ3ZCV2 418 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms