RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 A1BGP04217 495 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 CCL5P13501 91 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 CTSKP43235 329 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 ZNF280AP59817 542 aaPredicted RBP6.68□□□□□ -1.34
VPS35-204ENST00000563884 TEFQ10587 303 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 AUHQ13825 339 aaKnown RBP6.68□□□□□ -1.34
VPS35-204ENST00000563884 ANKRD39Q53RE8 183 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 CNKSR3Q6P9H4 555 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 ZNF790Q6PG37 636 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 CRTC3Q6UUV7 619 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 APOBEC3FQ8IUX4 373 aaKnown RBP6.68□□□□□ -1.34
VPS35-204ENST00000563884 C7orf61Q8IZ16 206 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 AGBL3Q8NEM8 1001 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 RAET1EQ8TD07 263 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 U2AF1L4Q8WU68 220 aaKnown RBP6.68□□□□□ -1.34
VPS35-204ENST00000563884 DSCC1Q9BVC3 393 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 AP5S1Q9NUS5 200 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 ABCC4O15439 1325 aa6.68□□□□□ -1.34
VPS35-204ENST00000563884 A0A1W2PQ27 194 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 A0A1W2PQ64 194 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 A0A1W2PQC6 194 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 A0A1W2PQD8 194 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 IRS4O14654 1257 aaPredicted RBP6.67□□□□□ -1.34
VPS35-204ENST00000563884 ECE2O60344 883 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 VAV1P15498 845 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 SYN1P17600 705 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 GUCY2CP25092 1073 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 MAGEA10P43363 369 aaPredicted RBP6.67□□□□□ -1.34
VPS35-204ENST00000563884 GIPRP48546 466 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 PMS1P54277 932 aaKnown RBP6.67□□□□□ -1.34
VPS35-204ENST00000563884 NECAB2Q7Z6G3 386 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 SLCO6A1Q86UG4 719 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 LSRQ86X29 649 aaPredicted RBP6.67□□□□□ -1.34
VPS35-204ENST00000563884 NAT16Q8N8M0 369 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 CDX2Q99626 313 aaPredicted RBP6.67□□□□□ -1.34
VPS35-204ENST00000563884 DBNDD1Q9H9R9 158 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 EPB41L4AQ9HCS5 686 aaPredicted RBP6.67□□□□□ -1.34
VPS35-204ENST00000563884 MYOZ2Q9NPC6 264 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 EFR3BQ9Y2G0 817 aa6.67□□□□□ -1.34
VPS35-204ENST00000563884 ASTN2O75129 1339 aaPredicted RBP6.67□□□□□ -1.34
VPS35-204ENST00000563884 OTOL1A6NHN0 477 aaPredicted RBP6.66□□□□□ -1.34
VPS35-204ENST00000563884 SHOXO15266 292 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 SGPL1O95470 568 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 VIL1P09327 827 aaKnown RBP6.66□□□□□ -1.34
VPS35-204ENST00000563884 MMP14P50281 582 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 LACTBP83111 547 aaPredicted RBP6.66□□□□□ -1.34
VPS35-204ENST00000563884 SULT6B1Q6IMI4 303 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 UNC5AQ6ZN44 842 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 RUFY4Q6ZNE9 571 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 PPP1R42Q7Z4L9 355 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 CCDC144CPQ8IYA2 1237 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 TMEFF1Q8IYR6 380 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 ATXN2LQ8WWM7 1075 aaKnown RBP6.66□□□□□ -1.34
VPS35-204ENST00000563884 SEC16BQ96JE7 1060 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 UHRF1Q96T88 793 aaPredicted RBP6.66□□□□□ -1.34
VPS35-204ENST00000563884 XYLT2Q9H1B5 865 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 RTEL1Q9NZ71 1219 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 IMPACTQ9P2X3 320 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 ACSL6Q9UKU0 697 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 ZMYND8Q9ULU4 1186 aaPredicted RBP6.66□□□□□ -1.34
VPS35-204ENST00000563884 RTL9Q8NET4 1388 aa6.66□□□□□ -1.34
VPS35-204ENST00000563884 MAST2Q6P0Q8 1798 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 C9IYK1 514 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 TFRCP02786 760 aaKnown RBP6.65□□□□□ -1.34
VPS35-204ENST00000563884 GSNP06396 782 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 GSTM1P09488 218 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 NCKAP1LP55160 1127 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 ZYXQ15942 572 aaKnown RBP6.65□□□□□ -1.34
VPS35-204ENST00000563884 CWF19L1Q69YN2 538 aaKnown RBP6.65□□□□□ -1.34
VPS35-204ENST00000563884 KIF6Q6ZMV9 814 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 DDX46Q7L014 1031 aaKnown RBP6.65□□□□□ -1.34
VPS35-204ENST00000563884 FAM129CQ86XR2 697 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 IGDCC3Q8IVU1 814 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 ZDHHC14Q8IZN3 488 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 C19orf47Q8N9M1 422 aaKnown RBP6.65□□□□□ -1.34
VPS35-204ENST00000563884 FEZF2Q8TBJ5 459 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 PWWP2AQ96N64 755 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 JMJD8Q96S16 334 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 KRTAP9-3Q9BYQ3 159 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 ACBD3Q9H3P7 528 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 ZCCHC17Q9NP64 241 aaKnown RBP6.65□□□□□ -1.34
VPS35-204ENST00000563884 TNFRSF12AQ9NP84 129 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 ZNF214Q9UL59 606 aaPredicted RBP6.65□□□□□ -1.34
VPS35-204ENST00000563884 RIPOR2Q9Y4F9 1068 aa6.65□□□□□ -1.34
VPS35-204ENST00000563884 TCF20Q9UGU0 1960 aaKnown RBP6.65□□□□□ -1.34
VPS35-204ENST00000563884 ZDBF2Q9HCK1 2354 aa6.65□□□□□ -1.35
VPS35-204ENST00000563884 LTBP2Q14767 1821 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 ERVV-1B6SEH8 477 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 MRE11P49959 708 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 GRAPQ13588 217 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 PRKG1Q13976 671 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 PARP10Q53GL7 1025 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 RPTNQ6XPR3 784 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 PPFIBP1Q86W92 1011 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 JAMLQ86YT9 394 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 OR6P1Q8NGX9 317 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 GRAPLQ8TC17 118 aaPredicted RBP6.64□□□□□ -1.35
VPS35-204ENST00000563884 SHDQ96IW2 340 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 THEGQ9P2T0 379 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 SRRDQ9UH36 339 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms