RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 MYADML2A6NDP7 307 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 LRRC10BA6NIK2 292 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 TLR3O15455 904 aaKnown RBP9.89□□□□□ -0.83
VPS39-207ENST00000563692 DYNC1LI2O43237 492 aaPredicted RBP9.89□□□□□ -0.83
VPS39-207ENST00000563692 EIF3JO75822 258 aaKnown RBP9.89□□□□□ -0.83
VPS39-207ENST00000563692 ASGR1P07306 291 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 RAG1P15918 1043 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 CYP11B2P19099 503 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 EEF1GP26641 437 aaKnown RBP9.89□□□□□ -0.83
VPS39-207ENST00000563692 CYP4A11Q02928 519 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 STK4Q13043 487 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 CTTNQ14247 550 aaKnown RBP9.89□□□□□ -0.83
VPS39-207ENST00000563692 LRIT3Q3SXY7 679 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 CDKAL1Q5VV42 579 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 B3GNT9Q6UX72 402 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 ANKRD33Q7Z3H0 272 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 FILIP1Q7Z7B0 1213 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 MYOCDQ8IZQ8 938 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 GUF1Q8N442 669 aaKnown RBP9.89□□□□□ -0.83
VPS39-207ENST00000563692 RDM1Q8NG50 284 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 MORC4Q8TE76 937 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 DNAJC19Q96DA6 116 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 ZFP91Q96JP5 570 aaPredicted RBP9.89□□□□□ -0.83
VPS39-207ENST00000563692 TOX2Q96NM4 488 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 KATNBL1Q9H079 304 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 THAP9Q9H5L6 903 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 SLC39A2Q9NP94 309 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 PDLIM7Q9NR12 457 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 RGL1Q9NZL6 768 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 Q9Y3F1 56 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 COL4A3BPQ9Y5P4 624 aa9.89□□□□□ -0.83
VPS39-207ENST00000563692 ALPK3Q96L96 1907 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 WDR64B1ANS9 1081 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 KCNJ18B7U540 433 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 DDX39AO00148 427 aaKnown RBP9.88□□□□□ -0.83
VPS39-207ENST00000563692 DHX15O43143 795 aaKnown RBP9.88□□□□□ -0.83
VPS39-207ENST00000563692 ADCY6O43306 1168 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 TBCAO75347 108 aaKnown RBP9.88□□□□□ -0.83
VPS39-207ENST00000563692 SMPD1P17405 629 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 GAP43P17677 238 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 QARSP47897 775 aaKnown RBP9.88□□□□□ -0.83
VPS39-207ENST00000563692 PSMC6P62333 389 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 LRRC63Q05C16 580 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 COASYQ13057 564 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 GIT2Q14161 759 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 KCNJ12Q14500 433 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 NR1I3Q14994 352 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 DUSP28Q4G0W2 176 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 FAM26FQ5R3K3 315 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 CENPPQ6IPU0 288 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 CCSAPQ6IQ19 270 aaPredicted RBP9.88□□□□□ -0.83
VPS39-207ENST00000563692 ZNF746Q6NUN9 644 aaPredicted RBP9.88□□□□□ -0.83
VPS39-207ENST00000563692 GPR153Q6NV75 609 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 FOXR2Q6PJQ5 311 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 TMC6Q7Z403 805 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 CREBRFQ8IUR6 639 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 CSGALNACT2Q8N6G5 542 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 CCDC150Q8NCX0 1101 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 IL31RAQ8NI17 732 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 SCFD2Q8WU76 684 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 BADQ92934 168 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 PURBQ96QR8 312 aaKnown RBP9.88□□□□□ -0.83
VPS39-207ENST00000563692 MED15Q96RN5 788 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 SENP7Q9BQF6 1050 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 SRRTQ9BXP5 876 aaKnown RBP9.88□□□□□ -0.83
VPS39-207ENST00000563692 SEZ6LQ9BYH1 1024 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 BHMT2Q9H2M3 363 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 ZHX3Q9H4I2 956 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 PKD2L1Q9P0L9 805 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 LIMA1Q9UHB6 759 aaKnown RBP9.88□□□□□ -0.83
VPS39-207ENST00000563692 GNEQ9Y223 722 aaKnown RBP9.88□□□□□ -0.83
VPS39-207ENST00000563692 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP9.88□□□□□ -0.83
VPS39-207ENST00000563692 SMCHD1A6NHR9 2005 aa9.88□□□□□ -0.83
VPS39-207ENST00000563692 ASTN1O14525 1302 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 NFASCO94856 1347 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 A0A1B0GTH6 734 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 ARHGEF35A5YM69 484 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 SPATA31C2B4DYI2 1134 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 ARVCFO00192 962 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 KIAA0355O15063 1070 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 NKRFO15226 690 aaKnown RBP eCLIP9.87□□□□□ -0.83
VPS39-207ENST00000563692 LYPLA2O95372 231 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 TPM1P09493 284 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 PTGS1P23219 599 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 CPT1AP50416 773 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 PSMC5P62195 406 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 NKX3-2P78367 333 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 BEX3Q00994 111 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 EHHADHQ08426 723 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 ITGB3BPQ13352 177 aaPredicted RBP9.87□□□□□ -0.83
VPS39-207ENST00000563692 TTLL4Q14679 1199 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 HSP90AA4PQ58FG1 418 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 ARSHQ5FYA8 562 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 TCP11X2Q5H9J9 407 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 SPECC1LQ69YQ0 1117 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 ANKRD40Q6AI12 368 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 TAPT1Q6NXT6 567 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 CXCL17Q6UXB2 119 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 STXBP4Q6ZWJ1 553 aa9.87□□□□□ -0.83
VPS39-207ENST00000563692 OTUD6AQ7L8S5 288 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms