RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 RB1P06400 928 aa18.95■□□□□ 0.62
CLK3-210ENST00000563112 CLCN3P51790 818 aa18.95■□□□□ 0.62
CLK3-210ENST00000563112 B3GNT9Q6UX72 402 aa18.95■□□□□ 0.62
CLK3-210ENST00000563112 NSUN7Q8NE18 718 aaKnown RBP18.95■□□□□ 0.62
CLK3-210ENST00000563112 PPP1R16BQ96T49 567 aa18.95■□□□□ 0.62
CLK3-210ENST00000563112 OSMRQ99650 979 aa18.95■□□□□ 0.62
CLK3-210ENST00000563112 ERVK-5Q9HDB9 667 aa18.95■□□□□ 0.62
CLK3-210ENST00000563112 SEPT9Q9UHD8 586 aaPredicted RBP18.95■□□□□ 0.62
CLK3-210ENST00000563112 ST3GAL5Q9UNP4 418 aa18.95■□□□□ 0.62
CLK3-210ENST00000563112 TBX3O15119 743 aa18.94■□□□□ 0.62
CLK3-210ENST00000563112 BAG4O95429 457 aaKnown RBP18.94■□□□□ 0.62
CLK3-210ENST00000563112 CTNNB1P35222 781 aa18.94■□□□□ 0.62
CLK3-210ENST00000563112 TMEM40Q8WWA1 233 aa18.94■□□□□ 0.62
CLK3-210ENST00000563112 HLA-CQ95604 372 aa18.94■□□□□ 0.62
CLK3-210ENST00000563112 ZNF689Q96CS4 500 aaPredicted RBP18.94■□□□□ 0.62
CLK3-210ENST00000563112 MRPL38Q96DV4 380 aaKnown RBP18.94■□□□□ 0.62
CLK3-210ENST00000563112 NIFKQ9BYG3 293 aaKnown RBP18.94■□□□□ 0.62
CLK3-210ENST00000563112 TMX1Q9H3N1 280 aa18.94■□□□□ 0.62
CLK3-210ENST00000563112 C1orf112Q9NSG2 853 aa18.94■□□□□ 0.62
CLK3-210ENST00000563112 LIMCH1Q9UPQ0 1083 aa18.94■□□□□ 0.62
CLK3-210ENST00000563112 NLRC5Q86WI3 1866 aa18.93■□□□□ 0.62
CLK3-210ENST00000563112 DDX11L8A8MPP1 907 aa18.93■□□□□ 0.62
CLK3-210ENST00000563112 GPR32O75388 356 aa18.93■□□□□ 0.62
CLK3-210ENST00000563112 BMPR1AP36894 532 aa18.93■□□□□ 0.62
CLK3-210ENST00000563112 SARSP49591 514 aaKnown RBP18.93■□□□□ 0.62
CLK3-210ENST00000563112 DNM2P50570 870 aa18.93■□□□□ 0.62
CLK3-210ENST00000563112 NLRP11P59045 1033 aaKnown RBP18.93■□□□□ 0.62
CLK3-210ENST00000563112 PSMC5P62195 406 aa18.93■□□□□ 0.62
CLK3-210ENST00000563112 MTERF2Q49AM1 385 aa18.93■□□□□ 0.62
CLK3-210ENST00000563112 CMTR2Q8IYT2 770 aaKnown RBP18.93■□□□□ 0.62
CLK3-210ENST00000563112 LRRC71Q8N4P6 559 aa18.93■□□□□ 0.62
CLK3-210ENST00000563112 SCLT1Q96NL6 688 aa18.93■□□□□ 0.62
CLK3-210ENST00000563112 ADAM2Q99965 735 aa18.93■□□□□ 0.62
CLK3-210ENST00000563112 C11orf84Q9BUA3 381 aaPredicted RBP18.93■□□□□ 0.62
CLK3-210ENST00000563112 RC3H2Q9HBD1 1191 aaKnown RBP18.93■□□□□ 0.62
CLK3-210ENST00000563112 KCNMB3Q9NPA1 279 aa18.93■□□□□ 0.62
CLK3-210ENST00000563112 RGS18Q9NS28 235 aa18.93■□□□□ 0.62
CLK3-210ENST00000563112 PCDHB7Q9Y5E2 793 aa18.93■□□□□ 0.62
CLK3-210ENST00000563112 NCOR1O75376 2440 aa18.93■□□□□ 0.62
CLK3-210ENST00000563112 RALGAPA2Q2PPJ7 1873 aa18.92■□□□□ 0.62
CLK3-210ENST00000563112 IBSPP21815 317 aaPredicted RBP18.92■□□□□ 0.62
CLK3-210ENST00000563112 CDC42EP1Q00587 391 aa18.92■□□□□ 0.62
CLK3-210ENST00000563112 NR5A1Q13285 461 aa18.92■□□□□ 0.62
CLK3-210ENST00000563112 PPP2R5CQ13362 524 aa18.92■□□□□ 0.62
CLK3-210ENST00000563112 TARBP2Q15633 366 aaKnown RBP18.92■□□□□ 0.62
CLK3-210ENST00000563112 TIGD5Q53EQ6 642 aa18.92■□□□□ 0.62
CLK3-210ENST00000563112 SLC24A5Q71RS6 500 aa18.92■□□□□ 0.62
CLK3-210ENST00000563112 SLFN12Q8IYM2 578 aa18.92■□□□□ 0.62
CLK3-210ENST00000563112 LINC01465Q8N7H1 131 aa18.92■□□□□ 0.62
CLK3-210ENST00000563112 BANK1Q8NDB2 785 aa18.92■□□□□ 0.62
CLK3-210ENST00000563112 C5orf67F2Z3F1 127 aa18.91■□□□□ 0.62
CLK3-210ENST00000563112 JAK2O60674 1132 aa18.91■□□□□ 0.62
CLK3-210ENST00000563112 MMP1P03956 469 aa18.91■□□□□ 0.62
CLK3-210ENST00000563112 ZSCAN20P17040 1043 aaPredicted RBP18.91■□□□□ 0.62
CLK3-210ENST00000563112 EIF4BP23588 611 aaKnown RBP18.91■□□□□ 0.62
CLK3-210ENST00000563112 QARSP47897 775 aaKnown RBP18.91■□□□□ 0.62
CLK3-210ENST00000563112 TFF2Q03403 129 aa18.91■□□□□ 0.62
CLK3-210ENST00000563112 FAM228AQ86W67 206 aa18.91■□□□□ 0.62
CLK3-210ENST00000563112 CRIPAKQ8N1N5 446 aa18.91■□□□□ 0.62
CLK3-210ENST00000563112 ADAMTS19Q8TE59 1207 aa18.91■□□□□ 0.62
CLK3-210ENST00000563112 CLP1Q92989 425 aaKnown RBP18.91■□□□□ 0.62
CLK3-210ENST00000563112 ZSCAN31Q96LW9 406 aaPredicted RBP18.91■□□□□ 0.62
CLK3-210ENST00000563112 JPH2Q9BR39 696 aaPredicted RBP18.91■□□□□ 0.62
CLK3-210ENST00000563112 PLVAPQ9BX97 442 aa18.91■□□□□ 0.62
CLK3-210ENST00000563112 LMAN2LQ9H0V9 348 aa18.91■□□□□ 0.62
CLK3-210ENST00000563112 ADAMTS10Q9H324 1103 aa18.91■□□□□ 0.62
CLK3-210ENST00000563112 VAV3Q9UKW4 847 aa18.91■□□□□ 0.62
CLK3-210ENST00000563112 BDP1A6H8Y1 2624 aa18.9■□□□□ 0.62
CLK3-210ENST00000563112 REV3LO60673 3130 aa18.9■□□□□ 0.62
CLK3-210ENST00000563112 EML1O00423 815 aa18.9■□□□□ 0.62
CLK3-210ENST00000563112 MGEA5O60502 916 aa18.9■□□□□ 0.62
CLK3-210ENST00000563112 P4HBP07237 508 aaKnown RBP18.9■□□□□ 0.62
CLK3-210ENST00000563112 GPC3P51654 580 aa18.9■□□□□ 0.62
CLK3-210ENST00000563112 FOSBP53539 338 aa18.9■□□□□ 0.62
CLK3-210ENST00000563112 EPHA7Q15375 998 aa18.9■□□□□ 0.62
CLK3-210ENST00000563112 SAFBQ15424 915 aaKnown RBP eCLIP18.9■□□□□ 0.62
CLK3-210ENST00000563112 EARS2Q5JPH6 523 aaKnown RBP18.9■□□□□ 0.62
CLK3-210ENST00000563112 POTEDQ86YR6 584 aa18.9■□□□□ 0.62
CLK3-210ENST00000563112 DIS3L2Q8IYB7 885 aaKnown RBP18.9■□□□□ 0.62
CLK3-210ENST00000563112 NLRP7Q8WX94 980 aa18.9■□□□□ 0.62
CLK3-210ENST00000563112 HAS1Q92839 578 aa18.9■□□□□ 0.62
CLK3-210ENST00000563112 BRWD1Q9NSI6 2320 aa18.89■□□□□ 0.61
CLK3-210ENST00000563112 FAM205CA6NFA0 338 aa18.89■□□□□ 0.61
CLK3-210ENST00000563112 BTBD18B2RXH4 712 aa18.89■□□□□ 0.61
CLK3-210ENST00000563112 C9IYK1 514 aa18.89■□□□□ 0.61
CLK3-210ENST00000563112 STBD1O95210 358 aa18.89■□□□□ 0.61
CLK3-210ENST00000563112 PAN2Q504Q3 1202 aaKnown RBP18.89■□□□□ 0.61
CLK3-210ENST00000563112 NCAPH2Q6IBW4 605 aa18.89■□□□□ 0.61
CLK3-210ENST00000563112 CCDC83Q8IWF9 413 aa18.89■□□□□ 0.61
CLK3-210ENST00000563112 EXOC8Q8IYI6 725 aa18.89■□□□□ 0.61
CLK3-210ENST00000563112 TNFRSF25Q93038 417 aa18.89■□□□□ 0.61
CLK3-210ENST00000563112 UHRF1Q96T88 793 aaPredicted RBP18.89■□□□□ 0.61
CLK3-210ENST00000563112 LLPHQ9BRT6 129 aaKnown RBP18.89■□□□□ 0.61
CLK3-210ENST00000563112 GCOM2Q9BZD3 368 aaPredicted RBP18.89■□□□□ 0.61
CLK3-210ENST00000563112 ATP6V0A4Q9HBG4 840 aa18.89■□□□□ 0.61
CLK3-210ENST00000563112 MRPL42Q9Y6G3 142 aaKnown RBP18.89■□□□□ 0.61
CLK3-210ENST00000563112 TMEM150BA6NC51 233 aa18.88■□□□□ 0.61
CLK3-210ENST00000563112 TNFRSF10AO00220 468 aa18.88■□□□□ 0.61
CLK3-210ENST00000563112 MAFO75444 373 aaPredicted RBP18.88■□□□□ 0.61
CLK3-210ENST00000563112 BMP1P13497 986 aa18.88■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms