RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 PRCPP42785 496 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 KRT83P78385 493 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 CCDC144BQ3MJ40 725 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 SFMBT2Q5VUG0 894 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 CACTINQ8WUQ7 758 aaKnown RBP10.07□□□□□ -0.8
VPS39-205ENST00000562258 GPRASP2Q96D09 838 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 TARS2Q9BW92 718 aaKnown RBP10.07□□□□□ -0.8
VPS39-205ENST00000562258 TUBE1Q9UJT0 475 aa10.07□□□□□ -0.8
VPS39-205ENST00000562258 TRIM49P0CI25 452 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 TRIM49CP0CI26 452 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 SREBF1P36956 1147 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 BFSP1Q12934 665 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 GPS2Q13227 327 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 PDIA5Q14554 519 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 EMC2Q15006 297 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 XXYLT1Q8NBI6 393 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 DHTKD1Q96HY7 919 aaPredicted RBP10.06□□□□□ -0.8
VPS39-205ENST00000562258 REEP2Q9BRK0 252 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 CYP39A1Q9NYL5 469 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 PRG3Q9Y2Y8 225 aaPredicted RBP10.06□□□□□ -0.8
VPS39-205ENST00000562258 PRKCBP05771 671 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 AKR1A1P14550 325 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 IFI16Q16666 785 aaKnown RBP10.06□□□□□ -0.8
VPS39-205ENST00000562258 HSP90B2PQ58FF3 399 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 ZNF569Q5MCW4 686 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 SCN4BQ8IWT1 228 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 BRI3BPQ8WY22 251 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 MTUS1Q9ULD2 1270 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 GLI3P10071 1580 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 ZBTB39O15060 712 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 COPB1P53618 953 aaKnown RBP10.06□□□□□ -0.8
VPS39-205ENST00000562258 SPECC1LQ69YQ0 1117 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 IL31RAQ8NI17 732 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 TIGD1Q96MW7 591 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 UBE2TQ9NPD8 197 aaPredicted RBP10.06□□□□□ -0.8
VPS39-205ENST00000562258 PDGFCQ9NRA1 345 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 KLK14Q9P0G3 267 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 DOT1LQ8TEK3 1739 aa10.06□□□□□ -0.8
VPS39-205ENST00000562258 GOLGA8SH3BPF8 625 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 INSRRP14616 1297 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 CRHR2Q13324 411 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 RRP1BQ14684 758 aaKnown RBP10.05□□□□□ -0.8
VPS39-205ENST00000562258 SLFN12LQ6IEE8 588 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 METTL23Q86XA0 190 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 GAS2L3Q86XJ1 694 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 SMAP1Q8IYB5 467 aaPredicted RBP10.05□□□□□ -0.8
VPS39-205ENST00000562258 IPO4Q8TEX9 1081 aaKnown RBP10.05□□□□□ -0.8
VPS39-205ENST00000562258 SOCS4Q8WXH5 440 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 MRPL4Q9BYD3 311 aaKnown RBP10.05□□□□□ -0.8
VPS39-205ENST00000562258 TRIM9Q9C026 710 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 MYMKA6NI61 221 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 NPM3O75607 178 aaKnown RBP10.05□□□□□ -0.8
VPS39-205ENST00000562258 RPA1P27694 616 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 ZNF75DP51815 510 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 TAX1BP1Q86VP1 789 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 RIOX2Q8IUF8 465 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 FMR1NBQ8N0W7 255 aaPredicted RBP10.05□□□□□ -0.8
VPS39-205ENST00000562258 MICALL1Q8N3F8 863 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 C17orf53Q8N3J3 647 aaPredicted RBP10.05□□□□□ -0.8
VPS39-205ENST00000562258 PCSK9Q8NBP7 692 aaKnown RBP10.05□□□□□ -0.8
VPS39-205ENST00000562258 MTMR14Q8NCE2 650 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 PLVAPQ9BX97 442 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 GCNT4Q9P109 453 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 RSPH10B2B2RC85 870 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 MED24O75448 989 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 NR3C1P04150 777 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 RSPH10BP0C881 870 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 MYO1EQ12965 1108 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 VWA3BQ502W6 1294 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 PAN2Q504Q3 1202 aaKnown RBP10.05□□□□□ -0.8
VPS39-205ENST00000562258 GLRA4Q5JXX5 417 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 HOOK3Q86VS8 718 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 SLC17A8Q8NDX2 589 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 KCNB2Q92953 911 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 KIF12Q96FN5 646 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 OSMRQ99650 979 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 DESI2Q9BSY9 194 aa10.05□□□□□ -0.8
VPS39-205ENST00000562258 AGO2Q9UKV8 859 aaKnown RBP10.05□□□□□ -0.8
VPS39-205ENST00000562258 LTBP3Q9NS15 1303 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 MAGEB2O15479 319 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 AFPP02771 609 aaKnown RBP10.04□□□□□ -0.8
VPS39-205ENST00000562258 OATP04181 439 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 FGFR4P22455 802 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 JAG1P78504 1218 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 PTK2Q05397 1052 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 STK4Q13043 487 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 MAP2K5Q13163 448 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 METTL7BQ6UX53 244 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 GSTA5Q7RTV2 222 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 ZNF579Q8NAF0 562 aaKnown RBP10.04□□□□□ -0.8
VPS39-205ENST00000562258 BTBD7Q9P203 1132 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 C17orf102A2RUQ5 167 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 TBX3O15119 743 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 TOB1P50616 345 aaPredicted RBP10.04□□□□□ -0.8
VPS39-205ENST00000562258 FSCN1Q16658 493 aaKnown RBP10.04□□□□□ -0.8
VPS39-205ENST00000562258 ZNF667Q5HYK9 610 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 AXDND1Q5T1B0 1012 aaPredicted RBP10.04□□□□□ -0.8
VPS39-205ENST00000562258 LIN9Q5TKA1 542 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 OR8K1Q8NGG5 319 aa10.04□□□□□ -0.8
VPS39-205ENST00000562258 SH3TC2Q8TF17 1288 aa10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms