RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 SETQ01105 290 aaPredicted RBP21.52■■□□□ 1.04
VPS35-202ENST00000561713 KRT76Q01546 638 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 IER5LQ5T953 404 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 MIS18BP1Q6P0N0 1132 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 TRIM67Q6ZTA4 783 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 RUFY3Q7L099 469 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 FBXL16Q8N461 479 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 CCDC148Q8NFR7 591 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 GJA10Q969M2 543 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 LENG9Q96B70 501 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 USP15Q9Y4E8 981 aaPredicted RBP21.52■■□□□ 1.04
VPS35-202ENST00000561713 SMIM35A0A1B0GVV1 85 aa21.51■■□□□ 1.03
VPS35-202ENST00000561713 KLRC1P26715 233 aa21.51■■□□□ 1.03
VPS35-202ENST00000561713 GNA11P29992 359 aa21.51■■□□□ 1.03
VPS35-202ENST00000561713 RBM10P98175 930 aaKnown RBP21.51■■□□□ 1.03
VPS35-202ENST00000561713 NFX1Q12986 1120 aaKnown RBP21.51■■□□□ 1.03
VPS35-202ENST00000561713 STK3Q13188 491 aa21.51■■□□□ 1.03
VPS35-202ENST00000561713 BMP8AQ7Z5Y6 402 aa21.51■■□□□ 1.03
VPS35-202ENST00000561713 CKAP2LQ8IYA6 745 aa21.51■■□□□ 1.03
VPS35-202ENST00000561713 PRSS33Q8NF86 280 aa21.51■■□□□ 1.03
VPS35-202ENST00000561713 TNPO1Q92973 898 aaKnown RBP21.51■■□□□ 1.03
VPS35-202ENST00000561713 PBXIP1Q96AQ6 731 aa21.51■■□□□ 1.03
VPS35-202ENST00000561713 AIFM3Q96NN9 605 aa21.51■■□□□ 1.03
VPS35-202ENST00000561713 TLE6Q9H808 572 aa21.51■■□□□ 1.03
VPS35-202ENST00000561713 CDHR5Q9HBB8 845 aa21.51■■□□□ 1.03
VPS35-202ENST00000561713 TCEAL9Q9UHQ7 104 aa21.51■■□□□ 1.03
VPS35-202ENST00000561713 KDM3AQ9Y4C1 1321 aa21.51■■□□□ 1.03
VPS35-202ENST00000561713 COL1A2P08123 1366 aa21.5■■□□□ 1.03
VPS35-202ENST00000561713 PER2O15055 1255 aa21.5■■□□□ 1.03
VPS35-202ENST00000561713 EDIL3O43854 480 aa21.5■■□□□ 1.03
VPS35-202ENST00000561713 HBP1O60381 514 aa21.5■■□□□ 1.03
VPS35-202ENST00000561713 MGEA5O60502 916 aa21.5■■□□□ 1.03
VPS35-202ENST00000561713 SARSP49591 514 aaKnown RBP21.5■■□□□ 1.03
VPS35-202ENST00000561713 SLC26A2P50443 739 aa21.5■■□□□ 1.03
VPS35-202ENST00000561713 ZXDAP98168 799 aa21.5■■□□□ 1.03
VPS35-202ENST00000561713 NME8Q8N427 588 aa21.5■■□□□ 1.03
VPS35-202ENST00000561713 MICAL1Q8TDZ2 1067 aa21.5■■□□□ 1.03
VPS35-202ENST00000561713 TMEM40Q8WWA1 233 aa21.5■■□□□ 1.03
VPS35-202ENST00000561713 ZSWIM6Q9HCJ5 1215 aa21.5■■□□□ 1.03
VPS35-202ENST00000561713 GABBR1Q9UBS5 961 aa21.5■■□□□ 1.03
VPS35-202ENST00000561713 PCDHB7Q9Y5E2 793 aa21.5■■□□□ 1.03
VPS35-202ENST00000561713 CHMP2AO43633 222 aa21.49■■□□□ 1.03
VPS35-202ENST00000561713 C22orf31O95567 290 aa21.49■■□□□ 1.03
VPS35-202ENST00000561713 CBX2Q14781 532 aaPredicted RBP21.49■■□□□ 1.03
VPS35-202ENST00000561713 ZNF746Q6NUN9 644 aaPredicted RBP21.49■■□□□ 1.03
VPS35-202ENST00000561713 VN1R2Q8NFZ6 395 aa21.49■■□□□ 1.03
VPS35-202ENST00000561713 ERVK-5Q9HDB9 667 aa21.49■■□□□ 1.03
VPS35-202ENST00000561713 HCSTQ9UBK5 93 aa21.49■■□□□ 1.03
VPS35-202ENST00000561713 NOC2LQ9Y3T9 749 aaKnown RBP21.49■■□□□ 1.03
VPS35-202ENST00000561713 PCDHB12Q9Y5F1 795 aa21.49■■□□□ 1.03
VPS35-202ENST00000561713 CYP46A1Q9Y6A2 500 aa21.49■■□□□ 1.03
VPS35-202ENST00000561713 TBKBP1A7MCY6 615 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 VTNP04004 478 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 CLCN3P51790 818 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 EVCP57679 992 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 NLRP5P59047 1200 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 UGCGQ16739 394 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 KIZQ2M2Z5 673 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 SPOUT1Q5T280 376 aaKnown RBP21.48■■□□□ 1.03
VPS35-202ENST00000561713 FAM102BQ5T8I3 360 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 KIAA0319LQ8IZA0 1049 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 BICD2Q8TD16 824 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 RPGRIP1Q96KN7 1286 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 OSMRQ99650 979 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 ADAM2Q99965 735 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 PHF7Q9BWX1 381 aaPredicted RBP21.48■■□□□ 1.03
VPS35-202ENST00000561713 TBC1D22BQ9NU19 505 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 SAMM50Q9Y512 469 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 MYO15AQ9UKN7 3530 aa21.48■■□□□ 1.03
VPS35-202ENST00000561713 MSH4O15457 936 aa21.47■■□□□ 1.03
VPS35-202ENST00000561713 RPS6KA5O75582 802 aa21.47■■□□□ 1.03
VPS35-202ENST00000561713 CIITAP33076 1130 aa21.47■■□□□ 1.03
VPS35-202ENST00000561713 ERVFC1P60507 584 aa21.47■■□□□ 1.03
VPS35-202ENST00000561713 ZNF484Q5JVG2 852 aa21.47■■□□□ 1.03
VPS35-202ENST00000561713 TRIM22Q8IYM9 498 aa21.47■■□□□ 1.03
VPS35-202ENST00000561713 METTL13Q8N6R0 699 aa21.47■■□□□ 1.03
VPS35-202ENST00000561713 TLR9Q9NR96 1032 aa21.47■■□□□ 1.03
VPS35-202ENST00000561713 DENND3A2RUS2 1198 aa21.46■■□□□ 1.03
VPS35-202ENST00000561713 FGF18O76093 207 aa21.46■■□□□ 1.03
VPS35-202ENST00000561713 TDP2O95551 362 aa21.46■■□□□ 1.03
VPS35-202ENST00000561713 NEFLP07196 543 aa21.46■■□□□ 1.03
VPS35-202ENST00000561713 PSAPP07602 524 aa21.46■■□□□ 1.03
VPS35-202ENST00000561713 UBE3AQ05086 875 aa21.46■■□□□ 1.03
VPS35-202ENST00000561713 SSRP1Q08945 709 aaKnown RBP21.46■■□□□ 1.03
VPS35-202ENST00000561713 MCTP2Q6DN12 878 aa21.46■■□□□ 1.03
VPS35-202ENST00000561713 SMAP1Q8IYB5 467 aaPredicted RBP21.46■■□□□ 1.03
VPS35-202ENST00000561713 TBCKQ8TEA7 893 aa21.46■■□□□ 1.03
VPS35-202ENST00000561713 ZNF668Q96K58 619 aaPredicted RBP21.46■■□□□ 1.03
VPS35-202ENST00000561713 AAASQ9NRG9 546 aa21.46■■□□□ 1.03
VPS35-202ENST00000561713 RGS18Q9NS28 235 aa21.46■■□□□ 1.03
VPS35-202ENST00000561713 TYW1Q9NV66 732 aaKnown RBP21.46■■□□□ 1.03
VPS35-202ENST00000561713 ST3GAL5Q9UNP4 418 aa21.46■■□□□ 1.03
VPS35-202ENST00000561713 PCDHA10Q9Y5I2 948 aa21.46■■□□□ 1.03
VPS35-202ENST00000561713 MAFBQ9Y5Q3 323 aaPredicted RBP21.46■■□□□ 1.03
VPS35-202ENST00000561713 ARID2Q68CP9 1835 aa21.45■■□□□ 1.03
VPS35-202ENST00000561713 CFAP54Q96N23 3096 aa21.45■■□□□ 1.02
VPS35-202ENST00000561713 WDR64B1ANS9 1081 aa21.45■■□□□ 1.02
VPS35-202ENST00000561713 CPLX1O14810 134 aa21.45■■□□□ 1.02
VPS35-202ENST00000561713 ZNF862O60290 1169 aa21.45■■□□□ 1.02
VPS35-202ENST00000561713 GAS7O60861 476 aa21.45■■□□□ 1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms