RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 PLS3P13797 630 aa23.47■■□□□ 1.35
CLN3-209ENST00000561689 CLCN1P35523 988 aa23.47■■□□□ 1.35
CLN3-209ENST00000561689 ADCYAP1R1P41586 468 aa23.47■■□□□ 1.35
CLN3-209ENST00000561689 FAM160B1Q5W0V3 765 aa23.47■■□□□ 1.35
CLN3-209ENST00000561689 TIPINQ9BVW5 301 aa23.47■■□□□ 1.35
CLN3-209ENST00000561689 IKZF4Q9H2S9 585 aa23.47■■□□□ 1.35
CLN3-209ENST00000561689 AZI2Q9H6S1 392 aa23.47■■□□□ 1.35
CLN3-209ENST00000561689 ZKSCAN5Q9Y2L8 839 aa23.47■■□□□ 1.35
CLN3-209ENST00000561689 FGFR1OPO95684 399 aaKnown RBP23.46■■□□□ 1.35
CLN3-209ENST00000561689 MTIF2P46199 727 aaKnown RBP23.46■■□□□ 1.35
CLN3-209ENST00000561689 LRMPQ12912 555 aa23.46■■□□□ 1.35
CLN3-209ENST00000561689 MAP2K5Q13163 448 aa23.46■■□□□ 1.35
CLN3-209ENST00000561689 TRIM50Q86XT4 487 aa23.46■■□□□ 1.35
CLN3-209ENST00000561689 AFAP1L1Q8TED9 768 aa23.46■■□□□ 1.35
CLN3-209ENST00000561689 CACTINQ8WUQ7 758 aaKnown RBP23.46■■□□□ 1.35
CLN3-209ENST00000561689 GLG1Q92896 1179 aa23.46■■□□□ 1.35
CLN3-209ENST00000561689 TUBGCP2Q9BSJ2 902 aa23.46■■□□□ 1.35
CLN3-209ENST00000561689 SLC5A4Q9NY91 659 aa23.46■■□□□ 1.35
CLN3-209ENST00000561689 PES1O00541 588 aaKnown RBP23.45■■□□□ 1.35
CLN3-209ENST00000561689 EIF3DO15371 548 aaKnown RBP eCLIP23.45■■□□□ 1.35
CLN3-209ENST00000561689 DGAT1O75907 488 aa23.45■■□□□ 1.35
CLN3-209ENST00000561689 PRKCSHP14314 528 aaPredicted RBP23.45■■□□□ 1.35
CLN3-209ENST00000561689 SPECC1LQ69YQ0 1117 aa23.45■■□□□ 1.35
CLN3-209ENST00000561689 K7ENM7 598 aa23.45■■□□□ 1.34
CLN3-209ENST00000561689 PEX3P56589 373 aa23.45■■□□□ 1.34
CLN3-209ENST00000561689 TRAF3IP3Q9Y228 551 aa23.45■■□□□ 1.34
CLN3-209ENST00000561689 PLXNA1Q9UIW2 1896 aa23.44■■□□□ 1.34
CLN3-209ENST00000561689 C11orf97A0A1B0GVM6 126 aaPredicted RBP23.44■■□□□ 1.34
CLN3-209ENST00000561689 RBM47A0AV96 593 aaKnown RBP23.44■■□□□ 1.34
CLN3-209ENST00000561689 MARK3P27448 753 aa23.44■■□□□ 1.34
CLN3-209ENST00000561689 ARHGAP1Q07960 439 aa23.44■■□□□ 1.34
CLN3-209ENST00000561689 ADAM9Q13443 819 aa23.44■■□□□ 1.34
CLN3-209ENST00000561689 EDRF1Q3B7T1 1238 aa23.44■■□□□ 1.34
CLN3-209ENST00000561689 STXBP4Q6ZWJ1 553 aa23.44■■□□□ 1.34
CLN3-209ENST00000561689 XPNPEP1Q9NQW7 623 aa23.44■■□□□ 1.34
CLN3-209ENST00000561689 PDLIM7Q9NR12 457 aa23.44■■□□□ 1.34
CLN3-209ENST00000561689 ZHX1Q9UKY1 873 aaPredicted RBP23.44■■□□□ 1.34
CLN3-209ENST00000561689 PCDHB13Q9Y5F0 798 aa23.44■■□□□ 1.34
CLN3-209ENST00000561689 LOXHD1Q8IVV2 1947 aa23.44■■□□□ 1.34
CLN3-209ENST00000561689 PDXKO00764 312 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 CA12O43570 354 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 AOC2O75106 756 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 UBXN1Q04323 297 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 ACVR2BQ13705 512 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 PPP4R3CPQ6ZMV5 832 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 LRRC8AQ8IWT6 810 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 STRA6Q9BX79 667 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 NIFKQ9BYG3 293 aaKnown RBP23.43■■□□□ 1.34
CLN3-209ENST00000561689 ATP6V0A4Q9HBG4 840 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 NRBP2Q9NSY0 501 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 TYW1Q9NV66 732 aaKnown RBP23.43■■□□□ 1.34
CLN3-209ENST00000561689 ZMYM2Q9UBW7 1377 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 LGALS16A8MUM7 142 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 TGFB1I1O43294 461 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 CALUO43852 315 aaPredicted RBP23.43■■□□□ 1.34
CLN3-209ENST00000561689 LGR5O75473 907 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 NR2F2P24468 414 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 PBX1P40424 430 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 POLGP54098 1239 aaPredicted RBP23.43■■□□□ 1.34
CLN3-209ENST00000561689 GSDMDP57764 484 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 ARMCX5Q6P1M9 558 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 CEP63Q96MT8 703 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 ABHD16BQ9H3Z7 469 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 FLRT1Q9NZU1 646 aa23.43■■□□□ 1.34
CLN3-209ENST00000561689 SLC16A4O15374 487 aa23.42■■□□□ 1.34
CLN3-209ENST00000561689 PPP1R37O75864 691 aa23.42■■□□□ 1.34
CLN3-209ENST00000561689 GH1P01241 217 aa23.42■■□□□ 1.34
CLN3-209ENST00000561689 CYP2B6P20813 491 aa23.42■■□□□ 1.34
CLN3-209ENST00000561689 GOLGA8FQ08AF8 430 aa23.42■■□□□ 1.34
CLN3-209ENST00000561689 GOLGA8DPQ0D2H9 430 aa23.42■■□□□ 1.34
CLN3-209ENST00000561689 LAMC2Q13753 1193 aa23.42■■□□□ 1.34
CLN3-209ENST00000561689 MCPH1Q8NEM0 835 aa23.42■■□□□ 1.34
CLN3-209ENST00000561689 BSNDQ8WZ55 320 aa23.42■■□□□ 1.34
CLN3-209ENST00000561689 KIFAP3Q92845 792 aa23.42■■□□□ 1.34
CLN3-209ENST00000561689 NOC4LQ9BVI4 516 aaKnown RBP23.42■■□□□ 1.34
CLN3-209ENST00000561689 CCDC169A6NNP5 214 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 TNPO2O14787 897 aaKnown RBP23.41■■□□□ 1.34
CLN3-209ENST00000561689 MAPTP10636 758 aaKnown RBP23.41■■□□□ 1.34
CLN3-209ENST00000561689 EMC2Q15006 297 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 MIIPQ5JXC2 388 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 PRAMEF19Q5SWL8 479 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 KIFC3Q9BVG8 833 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 CETN3O15182 167 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 CLIC2O15247 247 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 TPM2P07951 284 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 SMPD1P17405 629 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 MSNP26038 577 aaKnown RBP23.41■■□□□ 1.34
CLN3-209ENST00000561689 CTGFP29279 349 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 NPTX2P47972 431 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 TBX2Q13207 712 aaPredicted RBP23.41■■□□□ 1.34
CLN3-209ENST00000561689 NOGQ13253 232 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 CCL14Q16627 93 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 CCDC40Q4G0X9 1142 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 PLPPR4Q7Z2D5 763 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 HAUS6Q7Z4H7 955 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 ZC3H3Q8IXZ2 948 aaKnown RBP23.41■■□□□ 1.34
CLN3-209ENST00000561689 USP6NLQ92738 828 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 CEP89Q96ST8 783 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 UBE4BO95155 1302 aa23.41■■□□□ 1.34
CLN3-209ENST00000561689 NR3C1P04150 777 aa23.4■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms