RNA–Protein interactions for RNA: ENST00000560070.5

USP3-217, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 545 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-217ENST00000560070 PARNO95453 639 aaKnown RBP9.56□□□□□ -0.88
USP3-217ENST00000560070 CXCL10P02778 98 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 PFKMP08237 780 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 SRGAP2CP0DJJ0 459 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 MYOGP15173 224 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 ATP2A2P16615 1042 aaKnown RBP9.56□□□□□ -0.88
USP3-217ENST00000560070 FGFR4P22455 802 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 MARCKSP29966 332 aaPredicted RBP9.56□□□□□ -0.88
USP3-217ENST00000560070 PBX2P40425 430 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 KCNJ6P48051 423 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 DNM2P50570 870 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 FXR1P51114 621 aaKnown RBP eCLIP9.56□□□□□ -0.88
USP3-217ENST00000560070 POLGP54098 1239 aaPredicted RBP9.56□□□□□ -0.88
USP3-217ENST00000560070 GRIN1Q05586 938 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 ORC2Q13416 577 aaPredicted RBP9.56□□□□□ -0.88
USP3-217ENST00000560070 MKRN4PQ13434 485 aaPredicted RBP9.56□□□□□ -0.88
USP3-217ENST00000560070 PDIA5Q14554 519 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 LRIT3Q3SXY7 679 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 FBXO47Q5MNV8 452 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 POTEGQ6S5H5 508 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 RPAINQ86UA6 219 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 RHPN2Q8IUC4 686 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 KSR1Q8IVT5 923 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 SNX29Q8TEQ0 813 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 NLRP7Q8WX94 980 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 CCDC43Q96MW1 224 aaKnown RBP9.56□□□□□ -0.88
USP3-217ENST00000560070 MAP7D2Q96T17 732 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 OSMRQ99650 979 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 ZBED2Q9BTP6 218 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 MTIF3Q9H2K0 278 aaKnown RBP9.56□□□□□ -0.88
USP3-217ENST00000560070 KIAA1024Q9UPX6 916 aa9.56□□□□□ -0.88
USP3-217ENST00000560070 NOC2LQ9Y3T9 749 aaKnown RBP9.56□□□□□ -0.88
USP3-217ENST00000560070 ENPP3O14638 875 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 USO1O60763 962 aaKnown RBP9.55□□□□□ -0.88
USP3-217ENST00000560070 CAND2O75155 1236 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 GPR32O75388 356 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 MAFO75444 373 aaPredicted RBP9.55□□□□□ -0.88
USP3-217ENST00000560070 RPS6KA5O75582 802 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 ZSCAN22P10073 491 aaPredicted RBP9.55□□□□□ -0.88
USP3-217ENST00000560070 CRYBB1P53674 252 aaPredicted RBP9.55□□□□□ -0.88
USP3-217ENST00000560070 DEFB103AP81534 67 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 ATP2C1P98194 919 aaPredicted RBP9.55□□□□□ -0.88
USP3-217ENST00000560070 PKP1Q13835 747 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 BECN1Q14457 450 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 TPRNQ4KMQ1 711 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 PLEKHG4Q58EX7 1191 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 SPECC1Q5M775 1068 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 KRT79Q5XKE5 535 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 Q7L0L9 218 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 TMEM40Q8WWA1 233 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 PRPF31Q8WWY3 499 aaKnown RBP9.55□□□□□ -0.88
USP3-217ENST00000560070 SLC7A3Q8WY07 619 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 NLRP4Q96MN2 994 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 NACC1Q96RE7 527 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 CEP89Q96ST8 783 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 POLR3CQ9BUI4 534 aaPredicted RBP9.55□□□□□ -0.88
USP3-217ENST00000560070 IFIH1Q9BYX4 1025 aaKnown RBP9.55□□□□□ -0.88
USP3-217ENST00000560070 RAB34Q9BZG1 259 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 NKX2-4Q9H2Z4 354 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 ADAMTS10Q9H324 1103 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 ZSCAN16Q9H4T2 348 aaPredicted RBP9.55□□□□□ -0.88
USP3-217ENST00000560070 TUFT1Q9NNX1 390 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 DDX19AQ9NUU7 478 aaKnown RBP9.55□□□□□ -0.88
USP3-217ENST00000560070 PADI3Q9ULW8 664 aa9.55□□□□□ -0.88
USP3-217ENST00000560070 TNRC18O15417 2968 aaPredicted RBP9.55□□□□□ -0.88
USP3-217ENST00000560070 A0A087WZ62 844 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 ABHD14A-ACY1A0A1B0GW23 586 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 ARHGEF35A5YM69 484 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 E9PMD0 336 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 LAD1O00515 517 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 SSBP05455 408 aaKnown RBP eCLIP9.54□□□□□ -0.88
USP3-217ENST00000560070 RPA1P27694 616 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 PRPHP41219 470 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 WDR5P61964 334 aaKnown RBP9.54□□□□□ -0.88
USP3-217ENST00000560070 PAK2Q13177 524 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 DHX8Q14562 1220 aaKnown RBP9.54□□□□□ -0.88
USP3-217ENST00000560070 RASIP1Q5U651 963 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 TSHZ1Q6ZSZ6 1077 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 RTN4RL1Q86UN2 441 aaPredicted RBP9.54□□□□□ -0.88
USP3-217ENST00000560070 MYOCDQ8IZQ8 938 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 LINC01465Q8N7H1 131 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 IGSF22Q8N9C0 903 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 NEK9Q8TD19 979 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 CHAMP1Q96JM3 812 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 CLIC6Q96NY7 704 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 USP28Q96RU2 1077 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 FDXACB1Q9BRP7 624 aaPredicted RBP9.54□□□□□ -0.88
USP3-217ENST00000560070 PANK2Q9BZ23 570 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 ANKEF1Q9NU02 776 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 MSRAQ9UJ68 235 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 ST3GAL5Q9UNP4 418 aa9.54□□□□□ -0.88
USP3-217ENST00000560070 IGKV6-21A0A0C4DH24 114 aa9.53□□□□□ -0.88
USP3-217ENST00000560070 LOC101059915A0A1B0GWI6 518 aaPredicted RBP9.53□□□□□ -0.88
USP3-217ENST00000560070 LYPLA2O95372 231 aa9.53□□□□□ -0.88
USP3-217ENST00000560070 AMHP03971 560 aa9.53□□□□□ -0.88
USP3-217ENST00000560070 RFC5P40937 340 aa9.53□□□□□ -0.88
USP3-217ENST00000560070 RARRES1P49788 294 aa9.53□□□□□ -0.88
USP3-217ENST00000560070 GPC3P51654 580 aa9.53□□□□□ -0.88
USP3-217ENST00000560070 SMAD3P84022 425 aaKnown RBP9.53□□□□□ -0.88
USP3-217ENST00000560070 LAMTOR4Q0VGL1 99 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms