RNA–Protein interactions for RNA: ENST00000559961.1

SNX1-209, Transcript of sorting nexin 1, humanhuman

TSL 3

Gene SNX1, Length 712 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-209ENST00000559961 ALG13Q9NP73 1137 aaKnown RBP14.17□□□□□ -0.14
SNX1-209ENST00000559961 PUF60Q9UHX1 559 aaKnown RBP14.17□□□□□ -0.14
SNX1-209ENST00000559961 PLAGL2Q9UPG8 496 aa14.17□□□□□ -0.14
SNX1-209ENST00000559961 MRPL42Q9Y6G3 142 aaKnown RBP14.17□□□□□ -0.14
SNX1-209ENST00000559961 CHD9Q3L8U1 2897 aa14.17□□□□□ -0.14
SNX1-209ENST00000559961 GRXCR2A6NFK2 248 aa14.16□□□□□ -0.14
SNX1-209ENST00000559961 MMP1P03956 469 aa14.16□□□□□ -0.14
SNX1-209ENST00000559961 SRGAP2BP0DMP2 458 aa14.16□□□□□ -0.14
SNX1-209ENST00000559961 ALADP13716 330 aa14.16□□□□□ -0.14
SNX1-209ENST00000559961 NDUFV1P49821 464 aa14.16□□□□□ -0.14
SNX1-209ENST00000559961 PRKCEQ02156 737 aa14.16□□□□□ -0.14
SNX1-209ENST00000559961 BMS1Q14692 1282 aaKnown RBP14.16□□□□□ -0.14
SNX1-209ENST00000559961 XKR3Q5GH77 459 aa14.16□□□□□ -0.14
SNX1-209ENST00000559961 THNSL1Q8IYQ7 743 aa14.16□□□□□ -0.14
SNX1-209ENST00000559961 GADD45GIP1Q8TAE8 222 aaPredicted RBP14.16□□□□□ -0.14
SNX1-209ENST00000559961 NEK9Q8TD19 979 aa14.16□□□□□ -0.14
SNX1-209ENST00000559961 SLC5A5Q92911 643 aa14.16□□□□□ -0.14
SNX1-209ENST00000559961 POP1Q99575 1024 aaKnown RBP14.16□□□□□ -0.14
SNX1-209ENST00000559961 INO80BQ9C086 356 aaPredicted RBP14.16□□□□□ -0.14
SNX1-209ENST00000559961 TMEM161AQ9NX61 479 aa14.16□□□□□ -0.14
SNX1-209ENST00000559961 PRKAG3Q9UGI9 489 aa14.16□□□□□ -0.14
SNX1-209ENST00000559961 SEPT9Q9UHD8 586 aaPredicted RBP14.16□□□□□ -0.14
SNX1-209ENST00000559961 DDX11L8A8MPP1 907 aa14.15□□□□□ -0.14
SNX1-209ENST00000559961 BAG4O95429 457 aaKnown RBP14.15□□□□□ -0.14
SNX1-209ENST00000559961 ATP4AP20648 1035 aa14.15□□□□□ -0.14
SNX1-209ENST00000559961 EIF4BP23588 611 aaKnown RBP14.15□□□□□ -0.14
SNX1-209ENST00000559961 CLCN3P51790 818 aa14.15□□□□□ -0.14
SNX1-209ENST00000559961 UBE3AQ05086 875 aa14.15□□□□□ -0.14
SNX1-209ENST00000559961 LETM2Q2VYF4 491 aa14.15□□□□□ -0.14
SNX1-209ENST00000559961 MOXD1Q6UVY6 613 aa14.15□□□□□ -0.14
SNX1-209ENST00000559961 FAM178BQ8IXR5 827 aa14.15□□□□□ -0.14
SNX1-209ENST00000559961 KLHL23Q8NBE8 558 aa14.15□□□□□ -0.14
SNX1-209ENST00000559961 LINC01599Q8WXQ3 324 aa14.15□□□□□ -0.14
SNX1-209ENST00000559961 LARP6Q9BRS8 491 aaKnown RBP14.15□□□□□ -0.14
SNX1-209ENST00000559961 GCOM2Q9BZD3 368 aaPredicted RBP14.15□□□□□ -0.14
SNX1-209ENST00000559961 TMX1Q9H3N1 280 aa14.15□□□□□ -0.14
SNX1-209ENST00000559961 UNC45AQ9H3U1 944 aa14.15□□□□□ -0.14
SNX1-209ENST00000559961 ELAC1Q9H777 363 aaKnown RBP14.15□□□□□ -0.14
SNX1-209ENST00000559961 RC3H2Q9HBD1 1191 aaKnown RBP14.15□□□□□ -0.14
SNX1-209ENST00000559961 PPP4R2Q9NY27 417 aa14.15□□□□□ -0.14
SNX1-209ENST00000559961 DACT1Q9NYF0 836 aa14.15□□□□□ -0.14
SNX1-209ENST00000559961 DDX25Q9UHL0 483 aaKnown RBP14.15□□□□□ -0.14
SNX1-209ENST00000559961 HCN4Q9Y3Q4 1203 aa14.15□□□□□ -0.14
SNX1-209ENST00000559961 DOCK5Q9H7D0 1870 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 CYP3A7-CYP3A51PA0A087WV96 503 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 ZBTB42B2RXF5 422 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 GPR32O75388 356 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 GCFC2P16383 781 aaKnown RBP14.14□□□□□ -0.15
SNX1-209ENST00000559961 LAG3P18627 525 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 CYP3A7P24462 503 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 KRT17Q04695 432 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 MTERF2Q49AM1 385 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 PDE12Q6L8Q7 609 aaKnown RBP14.14□□□□□ -0.15
SNX1-209ENST00000559961 LRRC71Q8N4P6 559 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 TMEM87AQ8NBN3 555 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 DAGLBQ8NCG7 672 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 RNF169Q8NCN4 708 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 POF1BQ8WVV4 589 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 LENG9Q96B70 501 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 FAM20AQ96MK3 541 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 TLE6Q9H808 572 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 CDHR5Q9HBB8 845 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 COL4A6Q14031 1691 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 MICAL3Q7RTP6 2002 aa14.14□□□□□ -0.15
SNX1-209ENST00000559961 CARNS1A5YM72 827 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 C9IYK1 514 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 PSMD10O75832 226 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 ITGB1P05556 798 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 SKIP12755 728 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 IL9P15248 144 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 SFPQP23246 707 aaKnown RBP eCLIP14.13□□□□□ -0.15
SNX1-209ENST00000559961 ANAPC15P60006 121 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 PSMC5P62195 406 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 HYAL1Q12794 435 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 TRIM29Q14134 588 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 INF2Q27J81 1249 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 ERICH6BQ5W0A0 696 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 FAM228AQ86W67 206 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 SPPL3Q8TCT6 385 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 TMEM117Q9H0C3 514 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 EPHX3Q9H6B9 360 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 CD207Q9UJ71 328 aa14.13□□□□□ -0.15
SNX1-209ENST00000559961 CHD7Q9P2D1 2997 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 VCANP13611 3396 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 TTC28Q96AY4 2481 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 ADAMTS3O15072 1205 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 MGEA5O60502 916 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 CCNT1O60563 726 aaKnown RBP14.12□□□□□ -0.15
SNX1-209ENST00000559961 TDP2O95551 362 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 EOMESO95936 686 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 PPM1AP35813 382 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 FAM189BP81408 668 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 CLUL1Q15846 466 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 FAM102BQ5T8I3 360 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 OTUD6AQ7L8S5 288 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 NEK8Q86SG6 692 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 CRIPAKQ8N1N5 446 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 LRRC43Q8N309 656 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 TMEM40Q8WWA1 233 aa14.12□□□□□ -0.15
SNX1-209ENST00000559961 SLC7A3Q8WY07 619 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms