RNA–Protein interactions for RNA: ENST00000558988.5

SPG11-213, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

APPRIS ALT2 TSL 3

Gene SPG11, Length 620 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-213ENST00000558988 CDK8P49336 464 aa8.76□□□□□ -1.01
SPG11-213ENST00000558988 CACNB2Q08289 660 aaPredicted RBP8.76□□□□□ -1.01
SPG11-213ENST00000558988 UBE3CQ15386 1083 aa8.76□□□□□ -1.01
SPG11-213ENST00000558988 SWI5Q1ZZU3 235 aa8.76□□□□□ -1.01
SPG11-213ENST00000558988 KIAA1755Q5JYT7 1200 aa8.76□□□□□ -1.01
SPG11-213ENST00000558988 C12orf60Q5U649 245 aa8.76□□□□□ -1.01
SPG11-213ENST00000558988 CTR9Q6PD62 1173 aa8.76□□□□□ -1.01
SPG11-213ENST00000558988 NECAB2Q7Z6G3 386 aa8.76□□□□□ -1.01
SPG11-213ENST00000558988 CHMP4CQ96CF2 233 aa8.76□□□□□ -1.01
SPG11-213ENST00000558988 ATG4CQ96DT6 458 aa8.76□□□□□ -1.01
SPG11-213ENST00000558988 ATP8A2Q9NTI2 1148 aa8.76□□□□□ -1.01
SPG11-213ENST00000558988 SWAP70Q9UH65 585 aa8.76□□□□□ -1.01
SPG11-213ENST00000558988 ISY1Q9ULR0 285 aaKnown RBP8.76□□□□□ -1.01
SPG11-213ENST00000558988 ZMYND8Q9ULU4 1186 aaPredicted RBP8.76□□□□□ -1.01
SPG11-213ENST00000558988 RABGAP1Q9Y3P9 1069 aa8.76□□□□□ -1.01
SPG11-213ENST00000558988 EEF2P13639 858 aaKnown RBP8.75□□□□□ -1.01
SPG11-213ENST00000558988 DNM1Q05193 864 aaKnown RBP8.75□□□□□ -1.01
SPG11-213ENST00000558988 COG2Q14746 738 aa8.75□□□□□ -1.01
SPG11-213ENST00000558988 MFSD14CQ5VZR4 134 aa8.75□□□□□ -1.01
SPG11-213ENST00000558988 UBE2Q1Q7Z7E8 422 aa8.75□□□□□ -1.01
SPG11-213ENST00000558988 DPP9Q86TI2 863 aa8.75□□□□□ -1.01
SPG11-213ENST00000558988 SPACA3Q8IXA5 215 aa8.75□□□□□ -1.01
SPG11-213ENST00000558988 OTUD7AQ8TE49 926 aaPredicted RBP8.75□□□□□ -1.01
SPG11-213ENST00000558988 KCNC2Q96PR1 638 aa8.75□□□□□ -1.01
SPG11-213ENST00000558988 FANCD2OSQ96PS1 177 aa8.75□□□□□ -1.01
SPG11-213ENST00000558988 FSD1Q9BTV5 496 aa8.75□□□□□ -1.01
SPG11-213ENST00000558988 C11orf49Q9H6J7 331 aa8.75□□□□□ -1.01
SPG11-213ENST00000558988 SH2D4AQ9H788 454 aa8.75□□□□□ -1.01
SPG11-213ENST00000558988 FLRT1Q9NZU1 646 aa8.75□□□□□ -1.01
SPG11-213ENST00000558988 CEP290O15078 2479 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 A0A096LPE4 126 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 A0A1W2PPZ6 126 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 SLC15A5A6NIM6 579 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 M0R2C6 588 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 RNF113AO15541 343 aaKnown RBP8.74□□□□□ -1.01
SPG11-213ENST00000558988 PRDM1O75626 825 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 XRCC5P13010 732 aaKnown RBP8.74□□□□□ -1.01
SPG11-213ENST00000558988 ERCC3P19447 782 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 CYP2C19P33261 490 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 GDNFP39905 211 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 FXR1P51114 621 aaKnown RBP eCLIP8.74□□□□□ -1.01
SPG11-213ENST00000558988 ANO1Q5XXA6 986 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 C16orf86Q6ZW13 317 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 TOP6BLQ8N6T0 577 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 KBTBD3Q8NAB2 608 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 NPLOC4Q8TAT6 608 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 APPBP2Q92624 585 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 OSBP2Q969R2 916 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 CCDC17Q96LX7 622 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 STRBPQ96SI9 672 aaKnown RBP8.74□□□□□ -1.01
SPG11-213ENST00000558988 CRBNQ96SW2 442 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 NUP88Q99567 741 aaPredicted RBP8.74□□□□□ -1.01
SPG11-213ENST00000558988 MOV10L1Q9BXT6 1211 aaKnown RBP8.74□□□□□ -1.01
SPG11-213ENST00000558988 SPATC1LQ9H0A9 340 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 ATXN3LQ9H3M9 355 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 DCTPP1Q9H773 170 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 VCPKMTQ9H867 229 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 FBXO28Q9NVF7 368 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 ARPP21Q9UBL0 812 aaPredicted RBP8.74□□□□□ -1.01
SPG11-213ENST00000558988 STAP2Q9UGK3 403 aa8.74□□□□□ -1.01
SPG11-213ENST00000558988 NOVA2Q9UNW9 492 aaKnown RBP8.74□□□□□ -1.01
SPG11-213ENST00000558988 TRIOBPQ9H2D6 2365 aa8.73□□□□□ -1.01
SPG11-213ENST00000558988 GPAA1O43292 621 aa8.73□□□□□ -1.01
SPG11-213ENST00000558988 ADORA2AP29274 412 aa8.73□□□□□ -1.01
SPG11-213ENST00000558988 RRP1P56182 461 aaKnown RBP8.73□□□□□ -1.01
SPG11-213ENST00000558988 FAM83BQ5T0W9 1011 aa8.73□□□□□ -1.01
SPG11-213ENST00000558988 MAP3K21Q5TCX8 1036 aa8.73□□□□□ -1.01
SPG11-213ENST00000558988 LBX2Q6XYB7 198 aa8.73□□□□□ -1.01
SPG11-213ENST00000558988 LPAR1Q92633 364 aa8.73□□□□□ -1.01
SPG11-213ENST00000558988 USP6NLQ92738 828 aa8.73□□□□□ -1.01
SPG11-213ENST00000558988 SEC62Q99442 399 aaKnown RBP8.73□□□□□ -1.01
SPG11-213ENST00000558988 KANSL2Q9H9L4 492 aa8.73□□□□□ -1.01
SPG11-213ENST00000558988 CARS2Q9HA77 564 aaKnown RBP8.73□□□□□ -1.01
SPG11-213ENST00000558988 HOXC10Q9NYD6 342 aa8.73□□□□□ -1.01
SPG11-213ENST00000558988 ALPK3Q96L96 1907 aa8.73□□□□□ -1.01
SPG11-213ENST00000558988 GSG1L2A8MUP6 293 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 ERC2O15083 957 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 WDR46O15213 610 aaKnown RBP8.72□□□□□ -1.01
SPG11-213ENST00000558988 RNGTTO60942 597 aaKnown RBP8.72□□□□□ -1.01
SPG11-213ENST00000558988 PHACTR2O75167 634 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 PDGFAP04085 211 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 PCSK2P16519 638 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 MX1P20591 662 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 GRB14Q14449 540 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 SPRED3Q2MJR0 410 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 ANKRD45Q5TZF3 282 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 CCDC129Q6ZRS4 1044 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 FAM214BQ7L5A3 538 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 TTC16Q8NEE8 873 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 CXorf38Q8TB03 319 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 WDR89Q96FK6 387 aaPredicted RBP8.72□□□□□ -1.01
SPG11-213ENST00000558988 CALR3Q96L12 384 aaKnown RBP8.72□□□□□ -1.01
SPG11-213ENST00000558988 EPB41L4AQ9HCS5 686 aaPredicted RBP8.72□□□□□ -1.01
SPG11-213ENST00000558988 DISC1Q9NRI5 854 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 RTEL1Q9NZ71 1219 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 CXXC1Q9P0U4 656 aaPredicted RBP8.72□□□□□ -1.01
SPG11-213ENST00000558988 OGDHLQ9ULD0 1010 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 MTMR7Q9Y216 660 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 TMX2Q9Y320 296 aa8.72□□□□□ -1.01
SPG11-213ENST00000558988 CTDP1Q9Y5B0 961 aaPredicted RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms