RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 PPLO60437 1756 aa8.14□□□□□ -1.11
RTF1-204ENST00000558117 MEGF6O75095 1541 aa8.13□□□□□ -1.11
RTF1-204ENST00000558117 KIF1BO60333 1816 aa8.13□□□□□ -1.11
RTF1-204ENST00000558117 LOC105371045A0A1W2PR82 267 aa8.13□□□□□ -1.11
RTF1-204ENST00000558117 ASGR2P07307 311 aa8.13□□□□□ -1.11
RTF1-204ENST00000558117 ZSCAN22P10073 491 aaPredicted RBP8.13□□□□□ -1.11
RTF1-204ENST00000558117 PMLP29590 882 aa8.13□□□□□ -1.11
RTF1-204ENST00000558117 TCERG1LQ5VWI1 586 aa8.13□□□□□ -1.11
RTF1-204ENST00000558117 EPB41L1Q9H4G0 881 aa8.13□□□□□ -1.11
RTF1-204ENST00000558117 N4BP2Q86UW6 1770 aaPredicted RBP8.12□□□□□ -1.11
RTF1-204ENST00000558117 LY75O60449 1722 aa8.12□□□□□ -1.11
RTF1-204ENST00000558117 NSD2O96028 1365 aa8.12□□□□□ -1.11
RTF1-204ENST00000558117 EIF3AQ14152 1382 aaKnown RBP8.12□□□□□ -1.11
RTF1-204ENST00000558117 CCDC7Q96M83 1385 aa8.12□□□□□ -1.11
RTF1-204ENST00000558117 USP54Q70EL1 1684 aa8.12□□□□□ -1.11
RTF1-204ENST00000558117 ESYT3A0FGR9 886 aa8.12□□□□□ -1.11
RTF1-204ENST00000558117 FBLN1P23142 703 aa8.12□□□□□ -1.11
RTF1-204ENST00000558117 LIMS1P48059 325 aa8.12□□□□□ -1.11
RTF1-204ENST00000558117 KIZQ2M2Z5 673 aa8.12□□□□□ -1.11
RTF1-204ENST00000558117 JAZF1Q86VZ6 243 aa8.12□□□□□ -1.11
RTF1-204ENST00000558117 FAM129CQ86XR2 697 aa8.12□□□□□ -1.11
RTF1-204ENST00000558117 C1QL4Q86Z23 238 aa8.12□□□□□ -1.11
RTF1-204ENST00000558117 YIPF4Q9BSR8 244 aa8.12□□□□□ -1.11
RTF1-204ENST00000558117 PALD1Q9ULE6 856 aa8.12□□□□□ -1.11
RTF1-204ENST00000558117 KIF13BQ9NQT8 1826 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 SGSM2O43147 1006 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 MAFKO60675 156 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 MC3RP41968 323 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 AFF3P51826 1226 aaKnown RBP8.11□□□□□ -1.11
RTF1-204ENST00000558117 GABREP78334 506 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 STEAP3Q658P3 488 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 ETV3LQ6ZN32 361 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 MAMDC2Q7Z304 686 aaPredicted RBP8.11□□□□□ -1.11
RTF1-204ENST00000558117 MILR1Q7Z6M3 343 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 TMEFF1Q8IYR6 380 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.11□□□□□ -1.11
RTF1-204ENST00000558117 SLC7A14Q8TBB6 771 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 DDX11Q96FC9 970 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 SLC52A2Q9HAB3 445 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 PCDHA8Q9Y5H6 950 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 MRPL42Q9Y6G3 142 aaKnown RBP8.11□□□□□ -1.11
RTF1-204ENST00000558117 LTBP1Q14766 1721 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 THSD7BQ9C0I4 1608 aa8.11□□□□□ -1.11
RTF1-204ENST00000558117 POLR3AO14802 1390 aaPredicted RBP8.1□□□□□ -1.11
RTF1-204ENST00000558117 TRIOBPQ9H2D6 2365 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 CCDC163A0A0D9SF12 145 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 KRIT1O00522 736 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 APPP05067 770 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 MMP10P09238 476 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 IGFBP6P24592 240 aaPredicted RBP8.1□□□□□ -1.11
RTF1-204ENST00000558117 GRK2P25098 689 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 GRK3P35626 688 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 FOXO4P98177 505 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 MTDHQ86UE4 582 aaKnown RBP8.1□□□□□ -1.11
RTF1-204ENST00000558117 PANK1Q8TE04 598 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 PWWP2AQ96N64 755 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 ALG1Q9BT22 464 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 TMEM260Q9NX78 707 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 NDOR1Q9UHB4 597 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 ZNF652Q9Y2D9 606 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 PCDHB4Q9Y5E5 795 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 PCDHA9Q9Y5H5 950 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 SBF1O95248 1867 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 KAT6BQ8WYB5 2073 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 PIK3C2GO75747 1445 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 CASP8AP2Q9UKL3 1982 aa8.1□□□□□ -1.11
RTF1-204ENST00000558117 ARFGEF1Q9Y6D6 1849 aa8.09□□□□□ -1.11
RTF1-204ENST00000558117 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.09□□□□□ -1.11
RTF1-204ENST00000558117 AQP7O14520 342 aa8.09□□□□□ -1.11
RTF1-204ENST00000558117 HGSO14964 777 aaPredicted RBP8.09□□□□□ -1.11
RTF1-204ENST00000558117 PPP1R12AO14974 1030 aaPredicted RBP8.09□□□□□ -1.11
RTF1-204ENST00000558117 SOD2P04179 222 aa8.09□□□□□ -1.11
RTF1-204ENST00000558117 ATF2P15336 505 aa8.09□□□□□ -1.11
RTF1-204ENST00000558117 CACNB2Q08289 660 aaPredicted RBP8.09□□□□□ -1.11
RTF1-204ENST00000558117 B3GNT8Q7Z7M8 397 aa8.09□□□□□ -1.11
RTF1-204ENST00000558117 ZC3H18Q86VM9 953 aaKnown RBP8.09□□□□□ -1.11
RTF1-204ENST00000558117 KRTAP1-3Q8IUG1 177 aa8.09□□□□□ -1.11
RTF1-204ENST00000558117 SIAH1Q8IUQ4 282 aa8.09□□□□□ -1.11
RTF1-204ENST00000558117 CPA5Q8WXQ8 436 aa8.09□□□□□ -1.11
RTF1-204ENST00000558117 CLUHP3Q96NS8 147 aa8.09□□□□□ -1.11
RTF1-204ENST00000558117 KCNJ15Q99712 375 aa8.09□□□□□ -1.11
RTF1-204ENST00000558117 IPPKQ9H8X2 491 aa8.09□□□□□ -1.11
RTF1-204ENST00000558117 NCOA5Q9HCD5 579 aaKnown RBP8.09□□□□□ -1.11
RTF1-204ENST00000558117 POGKQ9P215 609 aa8.09□□□□□ -1.11
RTF1-204ENST00000558117 PMF1-BGLAPU3KQ54 211 aa8.09□□□□□ -1.11
RTF1-204ENST00000558117 MKI67P46013 3256 aaKnown RBP8.09□□□□□ -1.11
RTF1-204ENST00000558117 BRCA1P38398 1863 aaKnown RBP8.09□□□□□ -1.12
RTF1-204ENST00000558117 ACEP12821 1306 aa8.08□□□□□ -1.12
RTF1-204ENST00000558117 CRTAMO95727 393 aa8.08□□□□□ -1.12
RTF1-204ENST00000558117 GUCY1A3Q02108 690 aa8.08□□□□□ -1.12
RTF1-204ENST00000558117 DALRD3Q5D0E6 543 aaKnown RBP8.08□□□□□ -1.12
RTF1-204ENST00000558117 TRIM61Q5EBN2 209 aa8.08□□□□□ -1.12
RTF1-204ENST00000558117 GSTCDQ8NEC7 633 aa8.08□□□□□ -1.12
RTF1-204ENST00000558117 SMARCC2Q8TAQ2 1214 aa8.08□□□□□ -1.12
RTF1-204ENST00000558117 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.08□□□□□ -1.12
RTF1-204ENST00000558117 DACT3Q96B18 629 aaPredicted RBP8.08□□□□□ -1.12
RTF1-204ENST00000558117 SCLYQ96I15 445 aa8.08□□□□□ -1.12
RTF1-204ENST00000558117 GPR101Q96P66 508 aaPredicted RBP8.08□□□□□ -1.12
RTF1-204ENST00000558117 C14orf93Q9H972 538 aaKnown RBP8.08□□□□□ -1.12
RTF1-204ENST00000558117 EPB41L4AQ9HCS5 686 aaPredicted RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms