RNA–Protein interactions for RNA: ENST00000557782.1

TDP1-217, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 5

Gene TDP1, Length 318 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-217ENST00000557782 AGGF1Q8N302 714 aaeCLIP4.53□□□□□ -1.68
TDP1-217ENST00000557782 MFSD4AQ8N468 514 aa4.53□□□□□ -1.68
TDP1-217ENST00000557782 FBLIM1Q8WUP2 373 aa4.53□□□□□ -1.68
TDP1-217ENST00000557782 EZH1Q92800 747 aaPredicted RBP4.53□□□□□ -1.68
TDP1-217ENST00000557782 ACDQ96AP0 544 aa4.53□□□□□ -1.68
TDP1-217ENST00000557782 ZC3H10Q96K80 434 aaKnown RBP4.53□□□□□ -1.68
TDP1-217ENST00000557782 C16orf92Q96LL3 132 aa4.53□□□□□ -1.68
TDP1-217ENST00000557782 UNC45AQ9H3U1 944 aa4.53□□□□□ -1.68
TDP1-217ENST00000557782 IFT122Q9HBG6 1241 aa4.53□□□□□ -1.68
TDP1-217ENST00000557782 RASSF1Q9NS23 344 aa4.53□□□□□ -1.68
TDP1-217ENST00000557782 PDP2Q9P2J9 529 aa4.53□□□□□ -1.68
TDP1-217ENST00000557782 POLG2Q9UHN1 485 aa4.53□□□□□ -1.68
TDP1-217ENST00000557782 HDAC9Q9UKV0 1011 aa4.53□□□□□ -1.68
TDP1-217ENST00000557782 DSEQ9UL01 958 aa4.53□□□□□ -1.68
TDP1-217ENST00000557782 ASAP1Q9ULH1 1129 aa4.53□□□□□ -1.68
TDP1-217ENST00000557782 TPCN1Q9ULQ1 816 aa4.53□□□□□ -1.68
TDP1-217ENST00000557782 A0A1B0GVC2 190 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 UBA6A0AVT1 1052 aaPredicted RBP4.52□□□□□ -1.69
TDP1-217ENST00000557782 CCDC154A6NI56 674 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 PRSS47A8MTI9 375 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 GNAT3A8MTJ3 354 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 F8W735 103 aaPredicted RBP4.52□□□□□ -1.69
TDP1-217ENST00000557782 NKRFO15226 690 aaKnown RBP eCLIP4.52□□□□□ -1.69
TDP1-217ENST00000557782 NCAM2O15394 837 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 FIBPO43427 364 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 OIP5O43482 229 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 FRS3O43559 492 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 MAFKO60675 156 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 CSTBP04080 98 aaKnown RBP4.52□□□□□ -1.69
TDP1-217ENST00000557782 RPLP2P05387 115 aaKnown RBP4.52□□□□□ -1.69
TDP1-217ENST00000557782 LPLP06858 475 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 SRFP11831 508 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 SNRPBP14678 240 aaKnown RBP4.52□□□□□ -1.69
TDP1-217ENST00000557782 RXRBP28702 533 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 SDHAP31040 664 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 COPB2P35606 906 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 SNX17Q15036 470 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 PITRM1Q5JRX3 1037 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 FKBP15Q5T1M5 1219 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 THEMIS2Q5TEJ8 643 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 ICE2Q659A1 982 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 TIGD7Q6NT04 549 aaPredicted RBP4.52□□□□□ -1.69
TDP1-217ENST00000557782 RNF111Q6ZNA4 994 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 SUGP1Q8IWZ8 645 aaKnown RBP4.52□□□□□ -1.69
TDP1-217ENST00000557782 SYTL1Q8IYJ3 562 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 Q8N1Y9 231 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 TMEM130Q8N3G9 435 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 ZNF527Q8NB42 609 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 UHMK1Q8TAS1 419 aaKnown RBP4.52□□□□□ -1.69
TDP1-217ENST00000557782 KLHDC4Q8TBB5 520 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 NSUN6Q8TEA1 469 aaKnown RBP4.52□□□□□ -1.69
TDP1-217ENST00000557782 SH3RF2Q8TEC5 729 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 APIPQ96GX9 242 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 TMEM41AQ96HV5 264 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 COL25A1Q9BXS0 654 aaPredicted RBP4.52□□□□□ -1.69
TDP1-217ENST00000557782 ACE2Q9BYF1 805 aaPredicted RBP4.52□□□□□ -1.69
TDP1-217ENST00000557782 FOXP3Q9BZS1 431 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 KCTD10Q9H3F6 313 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 PNPLA8Q9NP80 782 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 DPP7Q9UHL4 492 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 CEP83Q9Y592 693 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 CAPN6Q9Y6Q1 641 aa4.52□□□□□ -1.69
TDP1-217ENST00000557782 ITIH6Q6UXX5 1313 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 CNTNAP4Q9C0A0 1308 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 FAM155AB1AL88 458 aaPredicted RBP4.51□□□□□ -1.69
TDP1-217ENST00000557782 DDX3XO00571 662 aaKnown RBP eCLIP4.51□□□□□ -1.69
TDP1-217ENST00000557782 SLC16A6O15403 523 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 DYNC1LI2O43237 492 aaPredicted RBP4.51□□□□□ -1.69
TDP1-217ENST00000557782 HTRA2O43464 458 aaPredicted RBP4.51□□□□□ -1.69
TDP1-217ENST00000557782 NCK2O43639 380 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 FKTNO75072 461 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 SKAP2O75563 359 aaPredicted RBP4.51□□□□□ -1.69
TDP1-217ENST00000557782 MBD4O95243 580 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 CNOT4O95628 575 aaKnown RBP4.51□□□□□ -1.69
TDP1-217ENST00000557782 FTLP02792 175 aaPredicted RBP4.51□□□□□ -1.69
TDP1-217ENST00000557782 FPR2P25090 351 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 SMARCA1P28370 1054 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 MMRN1Q13201 1228 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 SPIDRQ14159 915 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 TAF12Q16514 161 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 HLA-DQA1Q5Y7H0 255 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 FAAH2Q6GMR7 532 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 SWSAP1Q6NVH7 229 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 MZT2BQ6NZ67 158 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 CFAP161Q6P656 301 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 KLHDC10Q6PID8 442 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 SEZ6L2Q6UXD5 910 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 CYP26C1Q6V0L0 522 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 PPP1R3FQ6ZSY5 799 aaPredicted RBP4.51□□□□□ -1.69
TDP1-217ENST00000557782 RFX8Q6ZV50 586 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 PDZD4Q76G19 769 aaPredicted RBP4.51□□□□□ -1.69
TDP1-217ENST00000557782 TSPYL5Q86VY4 417 aaPredicted RBP4.51□□□□□ -1.69
TDP1-217ENST00000557782 OXR1Q8N573 874 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 CCDC33Q8N5R6 958 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 GPR161Q8N6U8 529 aaKnown RBP4.51□□□□□ -1.69
TDP1-217ENST00000557782 USHBP1Q8N6Y0 703 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 GIMAP8Q8ND71 665 aaPredicted RBP4.51□□□□□ -1.69
TDP1-217ENST00000557782 PIP4K2CQ8TBX8 421 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 TRAPPC12Q8WVT3 735 aa4.51□□□□□ -1.69
TDP1-217ENST00000557782 BRI3BPQ8WY22 251 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms