RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 MBOAT7Q96N66 472 aa12.34□□□□□ -0.43
SYNE2-227ENST00000557307 CEP89Q96ST8 783 aa12.34□□□□□ -0.43
SYNE2-227ENST00000557307 ADAM2Q99965 735 aa12.34□□□□□ -0.43
SYNE2-227ENST00000557307 SH3GLB2Q9NR46 395 aa12.34□□□□□ -0.43
SYNE2-227ENST00000557307 RNF19AQ9NV58 838 aa12.34□□□□□ -0.43
SYNE2-227ENST00000557307 ST3GAL5Q9UNP4 418 aa12.34□□□□□ -0.43
SYNE2-227ENST00000557307 SQORQ9Y6N5 450 aa12.34□□□□□ -0.43
SYNE2-227ENST00000557307 WDR64B1ANS9 1081 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 C9IYK1 514 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 EML1O00423 815 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 EPB41L2O43491 1005 aaKnown RBP12.33□□□□□ -0.44
SYNE2-227ENST00000557307 GAS7O60861 476 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 TBX10O75333 385 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 CSDE1O75534 798 aaKnown RBP12.33□□□□□ -0.44
SYNE2-227ENST00000557307 MMP1P03956 469 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 ITGB1P05556 798 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 FGFR1P11362 822 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 FDPSP14324 419 aaKnown RBP12.33□□□□□ -0.44
SYNE2-227ENST00000557307 SARSP49591 514 aaKnown RBP12.33□□□□□ -0.44
SYNE2-227ENST00000557307 AK2P54819 239 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 DSC3Q14574 896 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 COL19A1Q14993 1142 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 CLUL1Q15846 466 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 LEXMQ3ZCV2 418 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 Q4G0T1 1027 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 TIGD5Q53EQ6 642 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 TRIM22Q8IYM9 498 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 CMTR2Q8IYT2 770 aaKnown RBP12.33□□□□□ -0.44
SYNE2-227ENST00000557307 NME8Q8N427 588 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 METTL13Q8N6R0 699 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 NECAB1Q8N987 351 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 KLHL23Q8NBE8 558 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 PHF20Q9BVI0 1012 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 TEKT3Q9BXF9 490 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 FTHL17Q9BXU8 183 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 ADAMTS10Q9H324 1103 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 NSUN3Q9H649 340 aaKnown RBP12.33□□□□□ -0.44
SYNE2-227ENST00000557307 C11orf16Q9NQ32 467 aa12.33□□□□□ -0.44
SYNE2-227ENST00000557307 WRAP73Q9P2S5 460 aaPredicted RBP12.33□□□□□ -0.44
SYNE2-227ENST00000557307 CYP3A7-CYP3A51PA0A087WV96 503 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 WNT7AO00755 349 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 CPLX1O14810 134 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 PFKFB2O60825 505 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 COL9A1P20849 921 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 CYP3A7P24462 503 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 GPC3P51654 580 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 USP11P51784 963 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 CRYBB1P53674 252 aaPredicted RBP12.32□□□□□ -0.44
SYNE2-227ENST00000557307 NLRP11P59045 1033 aaKnown RBP12.32□□□□□ -0.44
SYNE2-227ENST00000557307 RBM10P98175 930 aaKnown RBP12.32□□□□□ -0.44
SYNE2-227ENST00000557307 TARBP2Q15633 366 aaKnown RBP12.32□□□□□ -0.44
SYNE2-227ENST00000557307 PTPROQ16827 1216 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 MTERF2Q49AM1 385 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 PLA2G4FQ68DD2 849 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 MCTP2Q6DN12 878 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 PTCRAQ6ISU1 281 aaPredicted RBP12.32□□□□□ -0.44
SYNE2-227ENST00000557307 EFCAB12Q6NXP0 572 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 EP400NLQ6ZTU2 488 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 ZNF579Q8NAF0 562 aaKnown RBP12.32□□□□□ -0.44
SYNE2-227ENST00000557307 SPPL3Q8TCT6 385 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 RGS18Q9NS28 235 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 CLDND1Q9NY35 253 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 SEPT9Q9UHD8 586 aaPredicted RBP12.32□□□□□ -0.44
SYNE2-227ENST00000557307 VAV3Q9UKW4 847 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 PLAGL2Q9UPG8 496 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 AKT3Q9Y243 479 aa12.32□□□□□ -0.44
SYNE2-227ENST00000557307 FAM86C2PA6NEL3 165 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 RPLP2P05387 115 aaKnown RBP12.31□□□□□ -0.44
SYNE2-227ENST00000557307 NEFLP07196 543 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 PBX3P40426 434 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 FOSBP53539 338 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 ME3Q16798 604 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 CTC1Q2NKJ3 1217 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 LETM2Q2VYF4 491 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 LRRC55Q6ZSA7 311 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 MIER3Q7Z3K6 550 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 FAM178BQ8IXR5 827 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 TNPO1Q92973 898 aaKnown RBP12.31□□□□□ -0.44
SYNE2-227ENST00000557307 PABPC5Q96DU9 382 aaKnown RBP12.31□□□□□ -0.44
SYNE2-227ENST00000557307 RIT2Q99578 217 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 C11orf84Q9BUA3 381 aaPredicted RBP12.31□□□□□ -0.44
SYNE2-227ENST00000557307 IGFLR1Q9H665 355 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 CWH43Q9H720 699 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 PPP4R2Q9NY27 417 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 TCEAL9Q9UHQ7 104 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 STK36Q9NRP7 1315 aa12.31□□□□□ -0.44
SYNE2-227ENST00000557307 DENND3A2RUS2 1198 aa12.3□□□□□ -0.44
SYNE2-227ENST00000557307 GRXCR2A6NFK2 248 aa12.3□□□□□ -0.44
SYNE2-227ENST00000557307 TBKBP1A7MCY6 615 aa12.3□□□□□ -0.44
SYNE2-227ENST00000557307 JAK2O60674 1132 aa12.3□□□□□ -0.44
SYNE2-227ENST00000557307 GLP2RO95838 553 aa12.3□□□□□ -0.44
SYNE2-227ENST00000557307 RB1P06400 928 aa12.3□□□□□ -0.44
SYNE2-227ENST00000557307 ATF7P17544 494 aaPredicted RBP12.3□□□□□ -0.44
SYNE2-227ENST00000557307 NR5A1Q13285 461 aa12.3□□□□□ -0.44
SYNE2-227ENST00000557307 NONOQ15233 471 aaKnown RBP eCLIP12.3□□□□□ -0.44
SYNE2-227ENST00000557307 POTEDQ86YR6 584 aa12.3□□□□□ -0.44
SYNE2-227ENST00000557307 KSR1Q8IVT5 923 aa12.3□□□□□ -0.44
SYNE2-227ENST00000557307 POF1BQ8WVV4 589 aa12.3□□□□□ -0.44
SYNE2-227ENST00000557307 HAS1Q92839 578 aa12.3□□□□□ -0.44
SYNE2-227ENST00000557307 TNFRSF25Q93038 417 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms