RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 SLC34A1Q06495 639 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 RNF43Q68DV7 783 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 CCDC174Q6PII3 467 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 ANKLE2Q86XL3 938 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 ZNF713Q8N859 430 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-226ENST00000556825 ZNF184Q99676 751 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-226ENST00000556825 TLR10Q9BXR5 811 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 SLC7A5P2Q9GIP4 190 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 MLXIPQ9HAP2 919 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 TAB2Q9NYJ8 693 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 NCK2O43639 380 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 TMED10P49755 219 aaKnown RBP14.89□□□□□ -0.03
SHMT2-226ENST00000556825 TNNC1P63316 161 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 CYP27A1Q02318 531 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 MSLNQ13421 630 aaPredicted RBP14.89□□□□□ -0.03
SHMT2-226ENST00000556825 UNC13DQ70J99 1090 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 C11orf74Q86VG3 221 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 NUP93Q8N1F7 819 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 TRPC4APQ8TEL6 797 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 DYDC2Q96IM9 177 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 CCDC68Q9H2F9 335 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 SEC31BQ9NQW1 1179 aa14.89□□□□□ -0.03
SHMT2-226ENST00000556825 FBP2O00757 339 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 PLCG2P16885 1265 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 PPIDQ08752 370 aaKnown RBP14.88□□□□□ -0.03
SHMT2-226ENST00000556825 SPA17Q15506 151 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 GRAMD1CQ8IYS0 662 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 STK11IPQ8N1F8 1099 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 TTC39CQ8N584 583 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.88□□□□□ -0.034e-7■■□□□ 12.9
SHMT2-226ENST00000556825 PGM2Q96G03 612 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 FSD1Q9BTV5 496 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 TRPC7Q9HCX4 862 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 SCHIP1Q9P0W5 487 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-226ENST00000556825 N4BP2Q86UW6 1770 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-226ENST00000556825 MYH7BA7E2Y1 1941 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 MAP3K19Q56UN5 1328 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 PPP1R3GB7ZBB8 358 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 BHMG1C9JSJ3 638 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-226ENST00000556825 SPECC1L-ADORA2AF8WAN1 911 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 POLR2DO15514 142 aaKnown RBP14.88□□□□□ -0.03
SHMT2-226ENST00000556825 KHDC1Q4VXA5 237 aaKnown RBP14.88□□□□□ -0.03
SHMT2-226ENST00000556825 SPDYCQ5MJ68 293 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 HS2ST1Q7LGA3 356 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 PATL1Q86TB9 770 aaKnown RBP14.88□□□□□ -0.03
SHMT2-226ENST00000556825 HSPBAP1Q96EW2 488 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 CCDC42Q96M95 316 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 TBC1D10AQ9BXI6 508 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 LRRC4CQ9HCJ2 640 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 MKS1Q9NXB0 559 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 SEC63Q9UGP8 760 aaKnown RBP14.88□□□□□ -0.03
SHMT2-226ENST00000556825 SSX2IPQ9Y2D8 614 aa14.88□□□□□ -0.03
SHMT2-226ENST00000556825 GPC6Q9Y625 555 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-226ENST00000556825 RGPD8O14715 1765 aaPredicted RBP14.88□□□□□ -0.03
SHMT2-226ENST00000556825 XRN1Q8IZH2 1706 aaKnown RBP14.88□□□□□ -0.03
SHMT2-226ENST00000556825 A0A1W2PQC6 194 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 NUTM2BA6NNL0 878 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-226ENST00000556825 NUTM2EB1AL46 878 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-226ENST00000556825 PIP4K2AP48426 406 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-226ENST00000556825 FLIIQ13045 1269 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 TCP11X2Q5H9J9 407 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 FAM47EQ6ZV65 393 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 STOX1Q6ZVD7 989 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 ZNF804AQ7Z570 1209 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 FAM186BQ8IYM0 893 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 ANKLE1Q8NAG6 615 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 NDEL1Q9GZM8 345 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 CLK4Q9HAZ1 481 aaKnown RBP14.87□□□□□ -0.03
SHMT2-226ENST00000556825 FGFR1OP2Q9NVK5 253 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 CLIC5Q9NZA1 410 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 TSPYL4Q9UJ04 414 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 GIT1Q9Y2X7 761 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 HBS1LQ9Y450 684 aaKnown RBP14.87□□□□□ -0.03
SHMT2-226ENST00000556825 ATP6V0A2Q9Y487 856 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 NR2E3Q9Y5X4 410 aa14.87□□□□□ -0.03
SHMT2-226ENST00000556825 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.87□□□□□ -0.03
SHMT2-226ENST00000556825 ZNF142P52746 1687 aaPredicted RBP14.87□□□□□ -0.03
SHMT2-226ENST00000556825 GTF2H1P32780 548 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 IARSP41252 1262 aaKnown RBP14.86□□□□□ -0.03
SHMT2-226ENST00000556825 IFNAR2P48551 515 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 CERKLQ49MI3 558 aaPredicted RBP14.86□□□□□ -0.03
SHMT2-226ENST00000556825 TMEM214Q6NUQ4 689 aaKnown RBP14.86□□□□□ -0.03
SHMT2-226ENST00000556825 TMC3Q7Z5M5 1100 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 CROCCP3Q8IVE0 287 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 ALDH16A1Q8IZ83 802 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 MB21D1Q8N884 522 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 HGH1Q9BTY7 390 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 NEUROG2Q9H2A3 272 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 TUT1Q9H6E5 874 aaKnown RBP14.86□□□□□ -0.03
SHMT2-226ENST00000556825 SEL1LQ9UBV2 794 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 CYP2C9P11712 490 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 KCNA6P17658 529 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 CSE1LP55060 971 aaKnown RBP14.86□□□□□ -0.03
SHMT2-226ENST00000556825 SEPT7Q16181 437 aaKnown RBP14.86□□□□□ -0.03
SHMT2-226ENST00000556825 CNGA2Q16280 664 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 SYCP2LQ5T4T6 812 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 C6orf183Q5T699 404 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 KRT27Q7Z3Y8 459 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 CATIPQ7Z7H3 387 aa14.86□□□□□ -0.03
SHMT2-226ENST00000556825 CABP7Q86V35 215 aa14.86□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms