RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 SPDYAQ5MJ70 313 aa7.5□□□□□ -1.21
PRPF39-209ENST00000556353 FOXRED1Q96CU9 486 aaPredicted RBP7.5□□□□□ -1.21
PRPF39-209ENST00000556353 OR14A2Q96R54 314 aa7.5□□□□□ -1.21
PRPF39-209ENST00000556353 ADOQ96SZ5 270 aa7.5□□□□□ -1.21
PRPF39-209ENST00000556353 PCIF1Q9H4Z3 704 aa7.5□□□□□ -1.21
PRPF39-209ENST00000556353 KANSL2Q9H9L4 492 aa7.5□□□□□ -1.21
PRPF39-209ENST00000556353 ACSS2Q9NR19 701 aa7.5□□□□□ -1.21
PRPF39-209ENST00000556353 TMEM260Q9NX78 707 aa7.5□□□□□ -1.21
PRPF39-209ENST00000556353 PTPDC1A2A3K4 754 aa7.49□□□□□ -1.21
PRPF39-209ENST00000556353 MATN2O00339 956 aa7.49□□□□□ -1.21
PRPF39-209ENST00000556353 PPP1R12AO14974 1030 aaPredicted RBP7.49□□□□□ -1.21
PRPF39-209ENST00000556353 ASMTLO95671 621 aa7.49□□□□□ -1.21
PRPF39-209ENST00000556353 RPS19P39019 145 aaKnown RBP7.49□□□□□ -1.21
PRPF39-209ENST00000556353 PIK3R6Q5UE93 754 aa7.49□□□□□ -1.21
PRPF39-209ENST00000556353 UBE2R2Q712K3 238 aaPredicted RBP7.49□□□□□ -1.21
PRPF39-209ENST00000556353 POLNQ7Z5Q5 900 aa7.49□□□□□ -1.21
PRPF39-209ENST00000556353 PLA2G12BQ9BX93 195 aa7.49□□□□□ -1.21
PRPF39-209ENST00000556353 SLC30A1Q9Y6M5 507 aa7.49□□□□□ -1.21
PRPF39-209ENST00000556353 RB1CC1Q8TDY2 1594 aa7.49□□□□□ -1.21
PRPF39-209ENST00000556353 H7C1D1 291 aa7.48□□□□□ -1.21
PRPF39-209ENST00000556353 TRAF5O00463 557 aa7.48□□□□□ -1.21
PRPF39-209ENST00000556353 ROM1Q03395 351 aa7.48□□□□□ -1.21
PRPF39-209ENST00000556353 ZNF174Q15697 407 aa7.48□□□□□ -1.21
PRPF39-209ENST00000556353 OR14K1Q8NGZ2 314 aa7.48□□□□□ -1.21
PRPF39-209ENST00000556353 CFHR4Q92496 578 aa7.48□□□□□ -1.21
PRPF39-209ENST00000556353 DVL2O14641 736 aa7.47□□□□□ -1.21
PRPF39-209ENST00000556353 RFPL3O75679 317 aa7.47□□□□□ -1.21
PRPF39-209ENST00000556353 CYP17A1P05093 508 aa7.47□□□□□ -1.21
PRPF39-209ENST00000556353 JMJD7P0C870 316 aa7.47□□□□□ -1.21
PRPF39-209ENST00000556353 C6P13671 934 aa7.47□□□□□ -1.21
PRPF39-209ENST00000556353 SDSP20132 328 aa7.47□□□□□ -1.21
PRPF39-209ENST00000556353 TACR2P21452 398 aa7.47□□□□□ -1.21
PRPF39-209ENST00000556353 SLC6A3Q01959 620 aa7.47□□□□□ -1.21
PRPF39-209ENST00000556353 SYNPOQ8N3V7 929 aa7.47□□□□□ -1.21
PRPF39-209ENST00000556353 EDAQ92838 391 aa7.47□□□□□ -1.21
PRPF39-209ENST00000556353 VPS11Q9H270 941 aa7.47□□□□□ -1.21
PRPF39-209ENST00000556353 VWA7Q9Y334 891 aa7.47□□□□□ -1.21
PRPF39-209ENST00000556353 PRLP01236 227 aa7.46□□□□□ -1.22
PRPF39-209ENST00000556353 AMHP03971 560 aa7.46□□□□□ -1.22
PRPF39-209ENST00000556353 ACO1P21399 889 aaKnown RBP7.46□□□□□ -1.22
PRPF39-209ENST00000556353 DUSP8Q13202 625 aa7.46□□□□□ -1.22
PRPF39-209ENST00000556353 PABPC4Q13310 644 aaKnown RBP eCLIP7.46□□□□□ -1.22
PRPF39-209ENST00000556353 KIAA1958Q8N8K9 716 aa7.46□□□□□ -1.22
PRPF39-209ENST00000556353 FAM89AQ96GI7 184 aa7.46□□□□□ -1.22
PRPF39-209ENST00000556353 SAE1Q9UBE0 346 aaPredicted RBP7.46□□□□□ -1.22
PRPF39-209ENST00000556353 MAGEC2Q9UBF1 373 aaPredicted RBP7.46□□□□□ -1.22
PRPF39-209ENST00000556353 B4GALT6Q9UBX8 382 aa7.46□□□□□ -1.22
PRPF39-209ENST00000556353 UBA6A0AVT1 1052 aaPredicted RBP7.45□□□□□ -1.22
PRPF39-209ENST00000556353 CBX4O00257 560 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 SLC26A4O43511 780 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 FSHBP01225 129 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 RGS3P49796 1198 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 SESN2P58004 480 aaPredicted RBP7.45□□□□□ -1.22
PRPF39-209ENST00000556353 HGFACQ04756 655 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 CFAP100Q494V2 611 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 TTC38Q5R3I4 469 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 CDCA2Q69YH5 1023 aaPredicted RBP7.45□□□□□ -1.22
PRPF39-209ENST00000556353 KLHDC10Q6PID8 442 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 CRIP3Q6Q6R5 217 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 NME9Q86XW9 330 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 BCL6BQ8N143 479 aaPredicted RBP7.45□□□□□ -1.22
PRPF39-209ENST00000556353 MAML3Q96JK9 1138 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 ZNF747Q9BV97 191 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 NELFAQ9H3P2 528 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 PIF1Q9H611 641 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 SRRDQ9UH36 339 aa7.45□□□□□ -1.22
PRPF39-209ENST00000556353 PMS2P1A4D2B8 440 aa7.44□□□□□ -1.22
PRPF39-209ENST00000556353 AKAP8O43823 692 aaKnown RBP7.44□□□□□ -1.22
PRPF39-209ENST00000556353 H2AFYO75367 372 aaKnown RBP7.44□□□□□ -1.22
PRPF39-209ENST00000556353 ADAM15Q13444 863 aa7.44□□□□□ -1.22
PRPF39-209ENST00000556353 TCEA2Q15560 299 aa7.44□□□□□ -1.22
PRPF39-209ENST00000556353 SLFN12LQ6IEE8 588 aa7.44□□□□□ -1.22
PRPF39-209ENST00000556353 Q6ZSN1 163 aa7.44□□□□□ -1.22
PRPF39-209ENST00000556353 SHCBP1Q8NEM2 672 aa7.44□□□□□ -1.22
PRPF39-209ENST00000556353 LPPQ93052 612 aa7.44□□□□□ -1.22
PRPF39-209ENST00000556353 INTS7Q9NVH2 962 aaKnown RBP7.44□□□□□ -1.22
PRPF39-209ENST00000556353 PLA2G3Q9NZ20 509 aa7.44□□□□□ -1.22
PRPF39-209ENST00000556353 NACADO15069 1562 aa7.43□□□□□ -1.22
PRPF39-209ENST00000556353 MSX2P35548 267 aaPredicted RBP7.43□□□□□ -1.22
PRPF39-209ENST00000556353 GDF5P43026 501 aa7.43□□□□□ -1.22
PRPF39-209ENST00000556353 EPHA7Q15375 998 aa7.43□□□□□ -1.22
PRPF39-209ENST00000556353 PRAMEF9Q5VWM5 478 aa7.43□□□□□ -1.22
PRPF39-209ENST00000556353 HOMER1Q86YM7 354 aa7.43□□□□□ -1.22
PRPF39-209ENST00000556353 GPR135Q8IZ08 494 aa7.43□□□□□ -1.22
PRPF39-209ENST00000556353 SLC16A11Q8NCK7 471 aa7.43□□□□□ -1.22
PRPF39-209ENST00000556353 OR5AN1Q8NGI8 311 aa7.43□□□□□ -1.22
PRPF39-209ENST00000556353 GFM2Q969S9 779 aaKnown RBP7.43□□□□□ -1.22
PRPF39-209ENST00000556353 C16orf92Q96LL3 132 aa7.43□□□□□ -1.22
PRPF39-209ENST00000556353 RNPC3Q96LT9 517 aaKnown RBP7.43□□□□□ -1.22
PRPF39-209ENST00000556353 TUBGCP5Q96RT8 1024 aa7.43□□□□□ -1.22
PRPF39-209ENST00000556353 DENND2AQ9ULE3 1009 aa7.43□□□□□ -1.22
PRPF39-209ENST00000556353 CTDP1Q9Y5B0 961 aaPredicted RBP7.43□□□□□ -1.22
PRPF39-209ENST00000556353 SLC9A1P19634 815 aa7.42□□□□□ -1.22
PRPF39-209ENST00000556353 PTX3P26022 381 aaPredicted RBP7.42□□□□□ -1.22
PRPF39-209ENST00000556353 FOXL1Q12952 345 aa7.42□□□□□ -1.22
PRPF39-209ENST00000556353 GRM7Q14831 915 aa7.42□□□□□ -1.22
PRPF39-209ENST00000556353 DGKDQ16760 1214 aa7.42□□□□□ -1.22
PRPF39-209ENST00000556353 NRN1LQ496H8 165 aa7.42□□□□□ -1.22
PRPF39-209ENST00000556353 USP39Q53GS9 565 aaKnown RBP7.42□□□□□ -1.22
PRPF39-209ENST00000556353 MAMDC4Q6UXC1 1216 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms