RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 PLA2G4FQ68DD2 849 aa12.15□□□□□ -0.46
SHMT2-218ENST00000555213 MTHFD1LQ6UB35 978 aa12.15□□□□□ -0.46
SHMT2-218ENST00000555213 ANO5Q75V66 913 aa12.15□□□□□ -0.46
SHMT2-218ENST00000555213 CABP7Q86V35 215 aa12.15□□□□□ -0.46
SHMT2-218ENST00000555213 ELOA2Q8IYF1 753 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-218ENST00000555213 METTL13Q8N6R0 699 aa12.15□□□□□ -0.46
SHMT2-218ENST00000555213 TRAPPC12Q8WVT3 735 aa12.15□□□□□ -0.46
SHMT2-218ENST00000555213 SYMPKQ92797 1274 aaKnown RBP12.15□□□□□ -0.46
SHMT2-218ENST00000555213 MAP7D2Q96T17 732 aa12.15□□□□□ -0.46
SHMT2-218ENST00000555213 NOC4LQ9BVI4 516 aaKnown RBP12.15□□□□□ -0.46
SHMT2-218ENST00000555213 FAM49AQ9H0Q0 323 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-218ENST00000555213 CYP26B1Q9NR63 512 aa12.15□□□□□ -0.46
SHMT2-218ENST00000555213 WRAP73Q9P2S5 460 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-218ENST00000555213 CCDC39Q9UFE4 941 aa12.15□□□□□ -0.46
SHMT2-218ENST00000555213 ZMYND8Q9ULU4 1186 aaPredicted RBP12.15□□□□□ -0.46
SHMT2-218ENST00000555213 PCDHA2Q9Y5H9 948 aa12.15□□□□□ -0.46
SHMT2-218ENST00000555213 SMIM35A0A1B0GVV1 85 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 ARHGEF35A5YM69 484 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 ZBTB42B2RXF5 422 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 ACTN4O43707 911 aaKnown RBP12.14□□□□□ -0.47
SHMT2-218ENST00000555213 GAS2O43903 313 aaKnown RBP12.14□□□□□ -0.47
SHMT2-218ENST00000555213 C22orf31O95567 290 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 KLRC1P26715 233 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 THPOP40225 353 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 SYKP43405 635 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 DNM2P50570 870 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 ADAM17P78536 824 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 RBL2Q08999 1139 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 MARCH8Q5T0T0 291 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 LRSAM1Q6UWE0 723 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 KRBA2Q6ZNG9 492 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 CCDC73Q6ZRK6 1079 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 SH3RF1Q7Z6J0 888 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 TMEM199Q8N511 208 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 PPP1R12CQ9BZL4 782 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 CCSER1Q9C0I3 900 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 NUP62CLQ9H1M0 184 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 SERTAD1Q9UHV2 236 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 DBR1Q9UK59 544 aaKnown RBP12.14□□□□□ -0.47
SHMT2-218ENST00000555213 KIAA1024Q9UPX6 916 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 DNM3Q9UQ16 869 aa12.14□□□□□ -0.47
SHMT2-218ENST00000555213 MYH9P35579 1960 aaKnown RBP12.14□□□□□ -0.47
SHMT2-218ENST00000555213 TMEM150BA6NC51 233 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 TRIM43BA6NCK2 446 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 POLR2DO15514 142 aaKnown RBP12.13□□□□□ -0.47
SHMT2-218ENST00000555213 DGAT1O75907 488 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 LETM1O95202 739 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-218ENST00000555213 STBD1O95210 358 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 PARNO95453 639 aaKnown RBP12.13□□□□□ -0.47
SHMT2-218ENST00000555213 TIMP1P01033 207 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 SELPP16109 830 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 SYN1P17600 705 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 RARRES1P49788 294 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 HIC1Q14526 733 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 TARBP2Q15633 366 aaKnown RBP12.13□□□□□ -0.47
SHMT2-218ENST00000555213 NAALADL2Q58DX5 795 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 HYIQ5T013 277 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 IER5Q5VY09 327 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 LRRC8DQ7L1W4 858 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 ZNF710Q8N1W2 664 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 NME8Q8N427 588 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 PIGOQ8TEQ8 1089 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 ERCC4Q92889 916 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-218ENST00000555213 SYAP1Q96A49 352 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-218ENST00000555213 TRIM43Q96BQ3 446 aaPredicted RBP12.13□□□□□ -0.47
SHMT2-218ENST00000555213 CTAGE1Q96RT6 745 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 MTRQ99707 1265 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 SUGCTQ9HAC7 445 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 ATP6V0A4Q9HBG4 840 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 FAM13BQ9NYF5 915 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 BRCA2P51587 3418 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 ALPK3Q96L96 1907 aa12.13□□□□□ -0.47
SHMT2-218ENST00000555213 MAFO75444 373 aaPredicted RBP12.12□□□□□ -0.47
SHMT2-218ENST00000555213 CTSHP09668 335 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 CKBP12277 381 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 RFC2P35250 354 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 NPEPPSP55786 919 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 FPGSQ05932 587 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 EMC2Q15006 297 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 ECM1Q16610 540 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 HABP4Q5JVS0 413 aaKnown RBP12.12□□□□□ -0.47
SHMT2-218ENST00000555213 MFSD5Q6N075 450 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 EFCAB12Q6NXP0 572 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 RUFY4Q6ZNE9 571 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 RPAINQ86UA6 219 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 MCPH1Q8NEM0 835 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 DNAJB3Q8WWF6 145 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 TCP11Q8WWU5 503 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 DHX38Q92620 1227 aaKnown RBP12.12□□□□□ -0.47
SHMT2-218ENST00000555213 SCLT1Q96NL6 688 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 PNMA5Q96PV4 448 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 PYM1Q9BRP8 204 aaKnown RBP12.12□□□□□ -0.47
SHMT2-218ENST00000555213 BHMT2Q9H2M3 363 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 TNMDQ9H2S6 317 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 AKT3Q9Y243 479 aa12.12□□□□□ -0.47
SHMT2-218ENST00000555213 RSPH10B2B2RC85 870 aa12.11□□□□□ -0.47
SHMT2-218ENST00000555213 H0YGN5 161 aa12.11□□□□□ -0.47
SHMT2-218ENST00000555213 USO1O60763 962 aaKnown RBP12.11□□□□□ -0.47
SHMT2-218ENST00000555213 KINO60870 393 aaKnown RBP12.11□□□□□ -0.47
SHMT2-218ENST00000555213 EYA4O95677 639 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms