RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 TAF2Q6P1X5 1199 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 RUFY4Q6ZNE9 571 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 SERINC5Q86VE9 423 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 EXOC8Q8IYI6 725 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 LRRC71Q8N4P6 559 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 METTL13Q8N6R0 699 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 RETREG2Q8NC44 543 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 JPH2Q9BR39 696 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-209ENST00000553949 RUSC1Q9BVN2 902 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 CUEDC2Q9H467 287 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 SUGCTQ9HAC7 445 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 ATP6V0A4Q9HBG4 840 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 BMP2KQ9NSY1 1161 aaPredicted RBP13.62□□□□□ -0.23
SHMT2-209ENST00000553949 LMBRD1Q9NUN5 540 aa13.62□□□□□ -0.23
SHMT2-209ENST00000553949 ACTN4O43707 911 aaKnown RBP13.61□□□□□ -0.23
SHMT2-209ENST00000553949 SLFN14P0C7P3 912 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 CYP11B2P19099 503 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 FAM160A1Q05DH4 1040 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 FAAP100Q0VG06 881 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 PTK7Q13308 1070 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 SNW1Q13573 536 aaKnown RBP13.61□□□□□ -0.23
SHMT2-209ENST00000553949 LONRF3Q496Y0 759 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 RINT1Q6NUQ1 792 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 EFCAB12Q6NXP0 572 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 C1orf186Q6ZWK4 172 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 SV2BQ7L1I2 683 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 CEP57L1Q8IYX8 460 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 FMR1NBQ8N0W7 255 aaPredicted RBP13.61□□□□□ -0.23
SHMT2-209ENST00000553949 LINC01465Q8N7H1 131 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 ENGASEQ8NFI3 743 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 MTRQ99707 1265 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 HTATIP2Q9BUP3 242 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 XPNPEP1Q9NQW7 623 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 PDLIM7Q9NR12 457 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 KCND2Q9NZV8 630 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 USP25Q9UHP3 1055 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 SERTAD1Q9UHV2 236 aa13.61□□□□□ -0.23
SHMT2-209ENST00000553949 SMIM35A0A1B0GVV1 85 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 GAS2O43903 313 aaKnown RBP13.6□□□□□ -0.23
SHMT2-209ENST00000553949 ZNF202O95125 648 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 LIG1P18858 919 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 TMOD1P28289 359 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 CLCN3P51790 818 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 MKRN4PQ13434 485 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-209ENST00000553949 DRP2Q13474 957 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 ARSHQ5FYA8 562 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 MAEAQ7L5Y9 396 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 GPBP1Q86WP2 473 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 KIAA0319LQ8IZA0 1049 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 MCPH1Q8NEM0 835 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 DNAJB3Q8WWF6 145 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 DHX38Q92620 1227 aaKnown RBP13.6□□□□□ -0.23
SHMT2-209ENST00000553949 WNT8BQ93098 351 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 TMEM143Q96AN5 459 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 FAM49AQ9H0Q0 323 aaPredicted RBP13.6□□□□□ -0.23
SHMT2-209ENST00000553949 TNMDQ9H2S6 317 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 MAGEF1Q9HAY2 307 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 KBTBD4Q9NVX7 518 aa13.6□□□□□ -0.23
SHMT2-209ENST00000553949 MYH9P35579 1960 aaKnown RBP13.6□□□□□ -0.23
SHMT2-209ENST00000553949 NPHP3-ACAD11A0A0J9YXS1 232 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 NR1I2O75469 434 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 RPLP2P05387 115 aaKnown RBP13.59□□□□□ -0.23
SHMT2-209ENST00000553949 CLTBP09497 229 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 GUCY2CP25092 1073 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 MCM4P33991 863 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 THPOP40225 353 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 DNM2P50570 870 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 TRIM71Q2Q1W2 868 aaKnown RBP13.59□□□□□ -0.23
SHMT2-209ENST00000553949 FAM102BQ5T8I3 360 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 IER5Q5VY09 327 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 KRBA2Q6ZNG9 492 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 RPAINQ86UA6 219 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 NME8Q8N427 588 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 CNNM3Q8NE01 707 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 TCP11Q8WWU5 503 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 STAMQ92783 540 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 PAGE5Q96GU1 130 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 MAP7D2Q96T17 732 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 TIPINQ9BVW5 301 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 GPRC5CQ9NQ84 441 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 TMEM39AQ9NV64 488 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 SUCLA2Q9P2R7 463 aaPredicted RBP13.59□□□□□ -0.23
SHMT2-209ENST00000553949 TBX21Q9UL17 535 aa13.59□□□□□ -0.23
SHMT2-209ENST00000553949 WDR81Q562E7 1941 aa13.58□□□□□ -0.23
SHMT2-209ENST00000553949 MYMKA6NI61 221 aa13.58□□□□□ -0.24
SHMT2-209ENST00000553949 KRT18P05783 430 aaKnown RBP13.58□□□□□ -0.24
SHMT2-209ENST00000553949 ARL2P36404 184 aa13.58□□□□□ -0.24
SHMT2-209ENST00000553949 AMPD3Q01432 767 aa13.58□□□□□ -0.24
SHMT2-209ENST00000553949 RAD51AP2Q09MP3 1159 aa13.58□□□□□ -0.24
SHMT2-209ENST00000553949 BFSP2Q13515 415 aa13.58□□□□□ -0.24
SHMT2-209ENST00000553949 RSPH3Q86UC2 560 aa13.58□□□□□ -0.24
SHMT2-209ENST00000553949 CAGE1Q8TC20 777 aa13.58□□□□□ -0.24
SHMT2-209ENST00000553949 PRPF31Q8WWY3 499 aaKnown RBP13.58□□□□□ -0.24
SHMT2-209ENST00000553949 PSPC1Q8WXF1 523 aaKnown RBP13.58□□□□□ -0.24
SHMT2-209ENST00000553949 TIGD1Q96MW7 591 aa13.58□□□□□ -0.24
SHMT2-209ENST00000553949 LRRC27Q9C0I9 530 aa13.58□□□□□ -0.24
SHMT2-209ENST00000553949 POLR3FQ9H1D9 316 aaPredicted RBP13.58□□□□□ -0.24
SHMT2-209ENST00000553949 POLD4Q9HCU8 107 aa13.58□□□□□ -0.24
SHMT2-209ENST00000553949 AKT3Q9Y243 479 aa13.58□□□□□ -0.24
SHMT2-209ENST00000553949 KIAA0355O15063 1070 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms