RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 IKQ13123 557 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-207ENST00000553837 PABPC4Q13310 644 aaKnown RBP eCLIP13.36□□□□□ -0.278e-7■■■■■ 32.8
SHMT2-207ENST00000553837 GIT2Q14161 759 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 MOXD1Q6UVY6 613 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 CCDC84Q86UT8 332 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-207ENST00000553837 CCDC65Q8IXS2 484 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 ACER1Q8TDN7 264 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 ALS2CR12Q96Q35 445 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 CSRNP1Q96S65 589 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 TANGO6Q9C0B7 1094 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 ATP6V0A4Q9HBG4 840 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 NLRC4Q9NPP4 1024 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 EMILIN3Q9NT22 766 aa13.36□□□□□ -0.27
SHMT2-207ENST00000553837 NEFHP12036 1026 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 PAX7P23759 505 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 RWDD2BP57060 319 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 RBM26Q5T8P6 1007 aaKnown RBP13.35□□□□□ -0.27
SHMT2-207ENST00000553837 BTNL9Q6UXG8 535 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 TRIM59Q8IWR1 403 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 CDAN1Q8IWY9 1227 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 SLFN12Q8IYM2 578 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 CYFIP2Q96F07 1278 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 IFIH1Q9BYX4 1025 aaKnown RBP13.35□□□□□ -0.27
SHMT2-207ENST00000553837 ZHX3Q9H4I2 956 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 GDF3Q9NR23 364 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 BMP2KQ9NSY1 1161 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-207ENST00000553837 SPATS2LQ9NUQ6 558 aaKnown RBP13.35□□□□□ -0.27
SHMT2-207ENST00000553837 VAV3Q9UKW4 847 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 PRR12Q9ULL5 1215 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 GMNCA6NCL1 334 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 RSPH10B2B2RC85 870 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 EML1O00423 815 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 ENTPD3O75355 529 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 MOCS3O95396 460 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 RSPH10BP0C881 870 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 MRPS25P82663 173 aaKnown RBP13.35□□□□□ -0.27
SHMT2-207ENST00000553837 GFPT1Q06210 699 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-207ENST00000553837 ITGB3BPQ13352 177 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-207ENST00000553837 ZC3H3Q8IXZ2 948 aaKnown RBP13.35□□□□□ -0.27
SHMT2-207ENST00000553837 IQCDQ96DY2 449 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 BORCS6Q96GS4 357 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 SH2D4AQ9H788 454 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 RNF14Q9UBS8 474 aa13.35□□□□□ -0.27
SHMT2-207ENST00000553837 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-207ENST00000553837 CLRN2A0PK11 232 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 GOLGA6L10A6NI86 522 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 TCP10L2B9ZVM9 353 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 RPA1P27694 616 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 CYP4A11Q02928 519 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 TLDC1Q6P9B6 456 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 ANKRD13CQ8N6S4 541 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 ARMC2Q8NEN0 867 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 P3H4Q92791 437 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 CEP63Q96MT8 703 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 SCLT1Q96NL6 688 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 REEP2Q9BRK0 252 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 SPDYE3A6NKU9 549 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 RTN2O75298 545 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 KRT18P05783 430 aaKnown RBP13.34□□□□□ -0.27
SHMT2-207ENST00000553837 HOXA7P31268 230 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-207ENST00000553837 CIITAP33076 1130 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 MARSP56192 900 aaKnown RBP13.34□□□□□ -0.27
SHMT2-207ENST00000553837 SLC8A3P57103 927 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 TRAF1Q13077 416 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 CFAP221Q4G0U5 840 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 FAM83BQ5T0W9 1011 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 DPY19L2P1Q6NXN4 242 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 FAM228AQ86W67 206 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 SFR1Q86XK3 245 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 CCDC125Q86Z20 511 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 SYT2Q8N9I0 419 aaPredicted RBP13.34□□□□□ -0.27
SHMT2-207ENST00000553837 WHAMMQ8TF30 809 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 PIK3R5Q8WYR1 880 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 WDR18Q9BV38 432 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 RUSC1Q9BVN2 902 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 LSM14BQ9BX40 385 aaKnown RBP13.34□□□□□ -0.27
SHMT2-207ENST00000553837 PPANQ9NQ55 473 aaKnown RBP13.34□□□□□ -0.27
SHMT2-207ENST00000553837 RGL1Q9NZL6 768 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 TPX2Q9ULW0 747 aaKnown RBP13.34□□□□□ -0.27
SHMT2-207ENST00000553837 NFU1Q9UMS0 254 aa13.34□□□□□ -0.27
SHMT2-207ENST00000553837 IGLV3-22A0A075B6J6 115 aa13.33□□□□□ -0.28
SHMT2-207ENST00000553837 TBX3O15119 743 aa13.33□□□□□ -0.28
SHMT2-207ENST00000553837 AKR1B10O60218 316 aa13.33□□□□□ -0.28
SHMT2-207ENST00000553837 MYBP10242 640 aa13.33□□□□□ -0.28
SHMT2-207ENST00000553837 IBSPP21815 317 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-207ENST00000553837 ADAM9Q13443 819 aa13.33□□□□□ -0.28
SHMT2-207ENST00000553837 LACTB2Q53H82 288 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-207ENST00000553837 ANKRD20A8PQ5CZ79 823 aa13.33□□□□□ -0.28
SHMT2-207ENST00000553837 NFRKBQ6P4R8 1299 aa13.33□□□□□ -0.28
SHMT2-207ENST00000553837 EPM2AIP1Q7L775 607 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-207ENST00000553837 ZNF483Q8TF39 744 aaPredicted RBP13.33□□□□□ -0.28
SHMT2-207ENST00000553837 IFT81Q8WYA0 676 aa13.33□□□□□ -0.28
SHMT2-207ENST00000553837 IKZF4Q9H2S9 585 aa13.33□□□□□ -0.28
SHMT2-207ENST00000553837 TSKSQ9UJT2 592 aa13.33□□□□□ -0.28
SHMT2-207ENST00000553837 PITPNM2Q9BZ72 1349 aa13.33□□□□□ -0.28
SHMT2-207ENST00000553837 MYH10P35580 1976 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 DNM1LO00429 736 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 PPIP5K2O43314 1243 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 SLC26A4O43511 780 aa13.32□□□□□ -0.28
SHMT2-207ENST00000553837 FAM153BP0C7A2 387 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms