RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 PAX4O43316 350 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 CELF2O95319 508 aaKnown RBP5.72□□□□□ -1.49
VTI1B-202ENST00000553619 MMP1P03956 469 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 U2AF2P26368 475 aaKnown RBP eCLIP5.72□□□□□ -1.49
VTI1B-202ENST00000553619 ECE1P42892 770 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 NAPAP54920 295 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 JAG1P78504 1218 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 PPIL2Q13356 520 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 VGLL4Q14135 290 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 COG2Q14746 738 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 ZYXQ15942 572 aaKnown RBP5.72□□□□□ -1.49
VTI1B-202ENST00000553619 PKN1Q16512 942 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 SKOR2Q2VWA4 1001 aaPredicted RBP5.72□□□□□ -1.49
VTI1B-202ENST00000553619 RILPL1Q5EBL4 403 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 HP1BP3Q5SSJ5 553 aaPredicted RBP5.72□□□□□ -1.49
VTI1B-202ENST00000553619 FAM83BQ5T0W9 1011 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 LDLRAD1Q5T700 205 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 TTBK2Q6IQ55 1244 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 HOMER1Q86YM7 354 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 SMC1BQ8NDV3 1235 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 GIMAP7Q8NHV1 300 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 CUL5Q93034 780 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 MTMR8Q96EF0 704 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 C12orf42Q96LP6 360 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 MFSD14AQ96MC6 490 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 PIGSQ96S52 555 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 NAP1L4Q99733 375 aaKnown RBP5.72□□□□□ -1.49
VTI1B-202ENST00000553619 PHF20Q9BVI0 1012 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 KRTAP9-9Q9BYP9 154 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 KRTAP9-4Q9BYQ2 154 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 SCAND2PQ9GZW5 306 aaPredicted RBP5.72□□□□□ -1.49
VTI1B-202ENST00000553619 ZNF408Q9H9D4 720 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 JMJD4Q9H9V9 463 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 NMRK2Q9NPI5 230 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 BARHL2Q9NY43 387 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 MAP3K20Q9NYL2 800 aaKnown RBP5.72□□□□□ -1.49
VTI1B-202ENST00000553619 FOXD3Q9UJU5 478 aaPredicted RBP5.72□□□□□ -1.49
VTI1B-202ENST00000553619 NOL7Q9UMY1 257 aaKnown RBP5.72□□□□□ -1.49
VTI1B-202ENST00000553619 CEP131Q9UPN4 1083 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 MRPL11Q9Y3B7 192 aaKnown RBP5.72□□□□□ -1.49
VTI1B-202ENST00000553619 DOCK1Q14185 1865 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 MYPNQ86TC9 1320 aa5.72□□□□□ -1.49
VTI1B-202ENST00000553619 MEGF11A6BM72 1044 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 TRIM75PA6NK02 468 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 WDR64B1ANS9 1081 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 UBE2Q2LH0YL09 131 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 CYTH3O43739 400 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 FLOT1O75955 427 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 TOMM70O94826 608 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 BAG4O95429 457 aaKnown RBP5.71□□□□□ -1.5
VTI1B-202ENST00000553619 DLGAP3O95886 979 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 BMP15O95972 392 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 FOSP01100 380 aaPredicted RBP5.71□□□□□ -1.5
VTI1B-202ENST00000553619 CETPP11597 493 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 TAL1P17542 331 aaPredicted RBP5.71□□□□□ -1.5
VTI1B-202ENST00000553619 MAP4P27816 1152 aaKnown RBP5.71□□□□□ -1.5
VTI1B-202ENST00000553619 HOXA7P31268 230 aaPredicted RBP5.71□□□□□ -1.5
VTI1B-202ENST00000553619 SLC16A2P36021 539 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 GTF2A2P52657 109 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 HMGCS2P54868 508 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 INHBEP58166 350 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 GUCY1B3Q02153 619 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 SNAPC2Q13487 334 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 TKFCQ3LXA3 575 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 CATSPERGQ6ZRH7 1159 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 HEATR3Q7Z4Q2 680 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 MCF2L2Q86YR7 1114 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 DIS3L2Q8IYB7 885 aaKnown RBP5.71□□□□□ -1.5
VTI1B-202ENST00000553619 BLIDQ8IZY5 108 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 SPICE1Q8N0Z3 855 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 MB21D1Q8N884 522 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 JMYQ8N9B5 988 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 DAGLBQ8NCG7 672 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 ZNF526Q8TF50 670 aaPredicted RBP5.71□□□□□ -1.5
VTI1B-202ENST00000553619 UBE2Q2Q8WVN8 375 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 PIBF1Q8WXW3 757 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 SLF1Q9BQI6 1058 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 TMPRSS13Q9BYE2 586 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 TANGO6Q9C0B7 1094 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 ZMYND12Q9H0C1 365 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 RPAP3Q9H6T3 665 aaPredicted RBP5.71□□□□□ -1.5
VTI1B-202ENST00000553619 EHMT1Q9H9B1 1298 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 CYP4F12Q9HCS2 524 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 LATS2Q9NRM7 1088 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 VPS54Q9P1Q0 977 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 PCDHA4Q9UN74 947 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 ZDHHC9Q9Y397 364 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 PCDHA1Q9Y5I3 950 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 SNCAIPQ9Y6H5 919 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 TCHHQ07283 1943 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 ABCB11O95342 1321 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 TRPM7Q96QT4 1865 aa5.71□□□□□ -1.5
VTI1B-202ENST00000553619 SRCAPQ6ZRS2 3230 aa5.7□□□□□ -1.5
VTI1B-202ENST00000553619 LOC100289279A0A1B0GTE1 492 aa5.7□□□□□ -1.5
VTI1B-202ENST00000553619 CCDC194A0A1B0GVG4 234 aa5.7□□□□□ -1.5
VTI1B-202ENST00000553619 hCG_1642624A0A1W2PR95 340 aa5.7□□□□□ -1.5
VTI1B-202ENST00000553619 BTBD18B2RXH4 712 aa5.7□□□□□ -1.5
VTI1B-202ENST00000553619 STXBP3O00186 592 aa5.7□□□□□ -1.5
VTI1B-202ENST00000553619 FZD6O60353 706 aa5.7□□□□□ -1.5
VTI1B-202ENST00000553619 ICMTO60725 284 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms