RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 USP17L10C9JJH3 530 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 F8W031 263 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 hCG_1984214I3L0E3 225 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 PGRMC1O00264 195 aaKnown RBP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 MEIS1O00470 390 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 STK25O00506 426 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 RSPH10BP0C881 870 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 MAGOHP61326 146 aaKnown RBP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 PPP2R2AP63151 447 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 GSTO1P78417 241 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 EPHA7Q15375 998 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 C10orf76Q5T2E6 689 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 DCAF12L1Q5VU92 463 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 NT5DC3Q86UY8 548 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 CCDC65Q8IXS2 484 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 RASGEF1CQ8N431 466 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 ZNF713Q8N859 430 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 LNX1Q8TBB1 728 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 MAGOHBQ96A72 148 aaKnown RBP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 SPAG5Q96R06 1193 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 TRIM31Q9BZY9 425 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 RTCBQ9Y3I0 505 aaKnown RBP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 IGKV6D-41A0A0C4DH26 115 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 PNMA6FA0A0J9YX94 578 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 C5orf60A6NFR6 353 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 F8VZ95 297 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 OPLAHO14841 1288 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 CETN3O15182 167 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 ATP2C2O75185 946 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 SHBGP04278 402 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 LDHCP07864 332 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 PRKCIP41743 596 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 EPS15P42566 896 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 JAM2P57087 298 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 SETQ01105 290 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 GABPAQ06546 454 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 ZNF543Q08ER8 600 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 SF3A3Q12874 501 aaKnown RBP eCLIP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 GIT2Q14161 759 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 EXOC3L4Q17RC7 722 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 ANKRD20A8PQ5CZ79 823 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 DCAF17Q5H9S7 520 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 DPP8Q6V1X1 898 aaPredicted RBP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 KCTD1Q719H9 257 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 PEX26Q7Z412 305 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 ADAT2Q7Z6V5 191 aaKnown RBP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 C3orf20Q8ND61 904 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 SEC14L1Q92503 715 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 LRRC45Q96CN5 670 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 SEC16BQ96JE7 1060 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 CALR3Q96L12 384 aaKnown RBP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 TXLNGYQ9BZA5 131 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 NYXQ9GZU5 481 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 DHX36Q9H2U1 1008 aaKnown RBP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 CXorf56Q9H5V9 222 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 ERVK-5Q9HDB9 667 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 CD209Q9NNX6 404 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 KCNMB3Q9NPA1 279 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 A1CFQ9NQ94 594 aaKnown RBP5.91□□□□□ -1.46
LIMA1-212ENST00000552491 HAUS2Q9NVX0 235 aa5.91□□□□□ -1.46
LIMA1-212ENST00000552491 SMCHD1A6NHR9 2005 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 MARCH6O60337 910 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 BUB1BO60566 1050 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-212ENST00000552491 CAND2O75155 1236 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 AFPP02771 609 aaKnown RBP5.9□□□□□ -1.46
LIMA1-212ENST00000552491 PAEPP09466 180 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 SPATA31C1P0DKV0 1188 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 TAL1P17542 331 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-212ENST00000552491 IBSPP21815 317 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-212ENST00000552491 DRD4P21917 467 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 GALCP54803 685 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 GPSM2P81274 684 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 DHX9Q08211 1270 aaKnown RBP5.9□□□□□ -1.46
LIMA1-212ENST00000552491 SPIRE1Q08AE8 756 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 PABPC4Q13310 644 aaKnown RBP eCLIP5.9□□□□□ -1.46
LIMA1-212ENST00000552491 DRP2Q13474 957 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 PICALMQ13492 652 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 PLCB4Q15147 1175 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 SHROOM1Q2M3G4 852 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-212ENST00000552491 EDRF1Q3B7T1 1238 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 ASPRV1Q53RT3 343 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 AADACL2Q6P093 401 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 TPTE2Q6XPS3 522 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 EPM2AIP1Q7L775 607 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-212ENST00000552491 SFR1Q86XK3 245 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 CATSPER3Q86XQ3 398 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 FUKQ8N0W3 1084 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 U2AF1L4Q8WU68 220 aaKnown RBP5.9□□□□□ -1.46
LIMA1-212ENST00000552491 TATDN2Q93075 761 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 SLC35C1Q96A29 364 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 HES6Q96HZ4 224 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 REEP2Q9BRK0 252 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 MTFR1LQ9H019 292 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 DDX4Q9NQI0 724 aaKnown RBP5.9□□□□□ -1.46
LIMA1-212ENST00000552491 ARMCX3Q9UH62 379 aaPredicted RBP5.9□□□□□ -1.46
LIMA1-212ENST00000552491 PPP1R9AQ9ULJ8 1098 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 TRAF3IP3Q9Y228 551 aa5.9□□□□□ -1.46
LIMA1-212ENST00000552491 ASTN1O14525 1302 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 FOCADQ5VW36 1801 aa5.9□□□□□ -1.47
LIMA1-212ENST00000552491 RGL2O15211 777 aa5.9□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms