RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 KAT14Q9H8E8 782 aa17.77■□□□□ 0.44
CLSTN3-216ENST00000545663 C1orf112Q9NSG2 853 aa17.77■□□□□ 0.44
CLSTN3-216ENST00000545663 TMEM161AQ9NX61 479 aa17.77■□□□□ 0.44
CLSTN3-216ENST00000545663 PCDHA2Q9Y5H9 948 aa17.77■□□□□ 0.44
CLSTN3-216ENST00000545663 NEDD4P46934 1319 aa17.76■□□□□ 0.43
CLSTN3-216ENST00000545663 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.76■□□□□ 0.43
CLSTN3-216ENST00000545663 RPS6KA5O75582 802 aa17.76■□□□□ 0.43
CLSTN3-216ENST00000545663 PPM1AP35813 382 aa17.76■□□□□ 0.43
CLSTN3-216ENST00000545663 PHLDB3Q6NSJ2 640 aa17.76■□□□□ 0.43
CLSTN3-216ENST00000545663 PI4K2BQ8TCG2 481 aa17.76■□□□□ 0.43
CLSTN3-216ENST00000545663 PCYT2Q99447 389 aa17.76■□□□□ 0.43
CLSTN3-216ENST00000545663 SENP7Q9BQF6 1050 aa17.76■□□□□ 0.43
CLSTN3-216ENST00000545663 TMEM117Q9H0C3 514 aa17.76■□□□□ 0.43
CLSTN3-216ENST00000545663 SMG5Q9UPR3 1016 aaKnown RBP17.76■□□□□ 0.43
CLSTN3-216ENST00000545663 NBEAQ8NFP9 2946 aa17.76■□□□□ 0.43
CLSTN3-216ENST00000545663 KDM3AQ9Y4C1 1321 aa17.75■□□□□ 0.43
CLSTN3-216ENST00000545663 RRN3P2A6NIE6 340 aa17.75■□□□□ 0.43
CLSTN3-216ENST00000545663 ZBTB5O15062 677 aa17.75■□□□□ 0.43
CLSTN3-216ENST00000545663 PLCB4Q15147 1175 aa17.75■□□□□ 0.43
CLSTN3-216ENST00000545663 SLC35G1Q2M3R5 365 aa17.75■□□□□ 0.43
CLSTN3-216ENST00000545663 LETM2Q2VYF4 491 aa17.75■□□□□ 0.43
CLSTN3-216ENST00000545663 OTUD7AQ8TE49 926 aaPredicted RBP17.75■□□□□ 0.43
CLSTN3-216ENST00000545663 SEPT1Q8WYJ6 367 aa17.75■□□□□ 0.43
CLSTN3-216ENST00000545663 MTMR8Q96EF0 704 aa17.75■□□□□ 0.43
CLSTN3-216ENST00000545663 SMARCAD1Q9H4L7 1026 aa17.75■□□□□ 0.43
CLSTN3-216ENST00000545663 PKD2L1Q9P0L9 805 aa17.75■□□□□ 0.43
CLSTN3-216ENST00000545663 FRMPD4Q14CM0 1322 aa17.74■□□□□ 0.43
CLSTN3-216ENST00000545663 STAM2O75886 525 aa17.74■□□□□ 0.43
CLSTN3-216ENST00000545663 SRFP11831 508 aa17.74■□□□□ 0.43
CLSTN3-216ENST00000545663 METAP2P50579 478 aaKnown RBP eCLIP17.74■□□□□ 0.43
CLSTN3-216ENST00000545663 CSTF1Q05048 431 aaKnown RBP17.74■□□□□ 0.43
CLSTN3-216ENST00000545663 DMWDQ09019 674 aa17.74■□□□□ 0.43
CLSTN3-216ENST00000545663 VPS52Q8N1B4 723 aa17.74■□□□□ 0.43
CLSTN3-216ENST00000545663 TMEM87AQ8NBN3 555 aa17.74■□□□□ 0.43
CLSTN3-216ENST00000545663 PJA1Q8NG27 643 aa17.74■□□□□ 0.43
CLSTN3-216ENST00000545663 ATRIPQ8WXE1 791 aa17.74■□□□□ 0.43
CLSTN3-216ENST00000545663 PPP1R16BQ96T49 567 aa17.74■□□□□ 0.43
CLSTN3-216ENST00000545663 ARHGEF3Q9NR81 526 aa17.74■□□□□ 0.43
CLSTN3-216ENST00000545663 DYNC1LI1Q9Y6G9 523 aaKnown RBP17.74■□□□□ 0.43
CLSTN3-216ENST00000545663 GCN1Q92616 2671 aaKnown RBP17.74■□□□□ 0.43
CLSTN3-216ENST00000545663 SPTLC1O15269 473 aa17.73■□□□□ 0.43
CLSTN3-216ENST00000545663 RPLP2P05387 115 aaKnown RBP17.73■□□□□ 0.43
CLSTN3-216ENST00000545663 KCNA2P16389 499 aa17.73■□□□□ 0.43
CLSTN3-216ENST00000545663 KCNA4P22459 653 aa17.73■□□□□ 0.43
CLSTN3-216ENST00000545663 ZNF528Q3MIS6 628 aa17.73■□□□□ 0.43
CLSTN3-216ENST00000545663 DCLRE1AQ6PJP8 1040 aa17.73■□□□□ 0.43
CLSTN3-216ENST00000545663 TMEM173Q86WV6 379 aaPredicted RBP17.73■□□□□ 0.43
CLSTN3-216ENST00000545663 HOMER1Q86YM7 354 aa17.73■□□□□ 0.43
CLSTN3-216ENST00000545663 SAMD3Q8N6K7 520 aa17.73■□□□□ 0.43
CLSTN3-216ENST00000545663 SECISBP2LQ93073 1101 aaKnown RBP17.73■□□□□ 0.43
CLSTN3-216ENST00000545663 ZBP1Q9H171 429 aa17.73■□□□□ 0.43
CLSTN3-216ENST00000545663 SFXN1Q9H9B4 322 aa17.73■□□□□ 0.43
CLSTN3-216ENST00000545663 SPATA6Q9NWH7 488 aaPredicted RBP17.73■□□□□ 0.43
CLSTN3-216ENST00000545663 COL4A3Q01955 1670 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 SMIM35A0A1B0GVV1 85 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 KLRF2D3W0D1 207 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 GBP2P32456 591 aaPredicted RBP17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 DSC3Q14574 896 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 PTPN14Q15678 1187 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 CLLU1OSQ5K130 101 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 MTHFD1LQ6UB35 978 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 LRRC43Q8N309 656 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 ENAHQ8N8S7 591 aaPredicted RBP17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 ESR2Q92731 530 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 FAM227BQ96M60 508 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 PIGSQ96S52 555 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 MYADMQ96S97 322 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 EPC1Q9H2F5 836 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 ELAC1Q9H777 363 aaKnown RBP17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 ANGPTL2Q9UKU9 493 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 DDX19BQ9UMR2 479 aa17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 MTF2Q9Y483 593 aaPredicted RBP17.72■□□□□ 0.43
CLSTN3-216ENST00000545663 LOC105378220A0A1B0GUY1 285 aaPredicted RBP17.71■□□□□ 0.43
CLSTN3-216ENST00000545663 SPDYE4A6NLX3 237 aa17.71■□□□□ 0.43
CLSTN3-216ENST00000545663 SLC30A4O14863 429 aa17.71■□□□□ 0.43
CLSTN3-216ENST00000545663 BCAR1P56945 870 aa17.71■□□□□ 0.43
CLSTN3-216ENST00000545663 SPEM2Q0P670 501 aa17.71■□□□□ 0.43
CLSTN3-216ENST00000545663 WTAPQ15007 396 aa17.71■□□□□ 0.43
CLSTN3-216ENST00000545663 TSSK4Q6SA08 328 aa17.71■□□□□ 0.43
CLSTN3-216ENST00000545663 FAM228AQ86W67 206 aa17.71■□□□□ 0.43
CLSTN3-216ENST00000545663 NME8Q8N427 588 aa17.71■□□□□ 0.43
CLSTN3-216ENST00000545663 RNF169Q8NCN4 708 aa17.71■□□□□ 0.43
CLSTN3-216ENST00000545663 GIMAP8Q8ND71 665 aaPredicted RBP17.71■□□□□ 0.43
CLSTN3-216ENST00000545663 PCDHGA2Q9Y5H1 932 aa17.71■□□□□ 0.43
CLSTN3-216ENST00000545663 DSPP15924 2871 aaKnown RBP17.7■□□□□ 0.42
CLSTN3-216ENST00000545663 C2orf16Q68DN1 1984 aa17.7■□□□□ 0.42
CLSTN3-216ENST00000545663 LAMTOR5O43504 91 aa17.7■□□□□ 0.42
CLSTN3-216ENST00000545663 MYBP10242 640 aa17.7■□□□□ 0.42
CLSTN3-216ENST00000545663 KIAA0319LQ8IZA0 1049 aa17.7■□□□□ 0.42
CLSTN3-216ENST00000545663 ABI1Q8IZP0 508 aa17.7■□□□□ 0.42
CLSTN3-216ENST00000545663 ZBTB44Q8NCP5 570 aa17.7■□□□□ 0.42
CLSTN3-216ENST00000545663 BCL7CQ8WUZ0 217 aaPredicted RBP17.7■□□□□ 0.42
CLSTN3-216ENST00000545663 ZSCAN10Q96SZ4 725 aaPredicted RBP17.7■□□□□ 0.42
CLSTN3-216ENST00000545663 FBXO4Q9UKT5 387 aa17.7■□□□□ 0.42
CLSTN3-216ENST00000545663 A0A0D9SFI3 127 aa17.69■□□□□ 0.42
CLSTN3-216ENST00000545663 GPR182O15218 404 aa17.69■□□□□ 0.42
CLSTN3-216ENST00000545663 KLRC1P26715 233 aa17.69■□□□□ 0.42
CLSTN3-216ENST00000545663 NONOQ15233 471 aaKnown RBP eCLIP17.69■□□□□ 0.42
CLSTN3-216ENST00000545663 LPAL2Q16609 132 aa17.69■□□□□ 0.42
CLSTN3-216ENST00000545663 KIZQ2M2Z5 673 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms