RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 AFMP43652 599 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 CPT1AP50416 773 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 STAT5BP51692 787 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 SP4Q02446 784 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 FAAP100Q0VG06 881 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 CTTNQ14247 550 aaKnown RBP10.58□□□□□ -0.72
YBX3-215ENST00000544504 RAB30Q15771 203 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 XKR3Q5GH77 459 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 TMEM31Q5JXX7 168 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 RASIP1Q5U651 963 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 SWSAP1Q6NVH7 229 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 POTEGQ6S5H5 508 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 PLPPR4Q7Z2D5 763 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 SYT2Q8N9I0 419 aaPredicted RBP10.58□□□□□ -0.72
YBX3-215ENST00000544504 BANK1Q8NDB2 785 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 OR6J1Q8NGC5 347 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 PLIN2Q99541 437 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 GPR20Q99678 358 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 C7orf25Q9BPX7 421 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 TIPINQ9BVW5 301 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 GZF1Q9H116 711 aaPredicted RBP10.58□□□□□ -0.72
YBX3-215ENST00000544504 NRBP2Q9NSY0 501 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 BLOC1S4Q9NUP1 217 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 GABBR1Q9UBS5 961 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 TUBE1Q9UJT0 475 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 ZNF215Q9UL58 517 aaPredicted RBP10.58□□□□□ -0.72
YBX3-215ENST00000544504 MAFBQ9Y5Q3 323 aaPredicted RBP10.58□□□□□ -0.72
YBX3-215ENST00000544504 IGSF9BQ9UPX0 1349 aa10.58□□□□□ -0.72
YBX3-215ENST00000544504 PVALEFA0A1B0GWK0 134 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 A0A1W2PQ45 241 aaPredicted RBP10.57□□□□□ -0.72
YBX3-215ENST00000544504 GSTTP1A0A1W2PQM5 241 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 A0A1W2PQY0 241 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 SYCE3A1L190 88 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 DUSP11O75319 330 aaKnown RBP10.57□□□□□ -0.72
YBX3-215ENST00000544504 SSBP05455 408 aaKnown RBP eCLIP10.57□□□□□ -0.72
YBX3-215ENST00000544504 KRT18P05783 430 aaKnown RBP10.57□□□□□ -0.72
YBX3-215ENST00000544504 SMPD1P17405 629 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 YWHABP31946 246 aaKnown RBP10.57□□□□□ -0.72
YBX3-215ENST00000544504 PPP1R2P41236 205 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 DPYDQ12882 1025 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 PPIGQ13427 754 aaKnown RBP eCLIP10.57□□□□□ -0.725e-7■■■□□ 14.7
YBX3-215ENST00000544504 MCM6Q14566 821 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 KCNB1Q14721 858 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 DGKDQ16760 1214 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 PRAMEF19Q5SWL8 479 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 NT5DC1Q5TFE4 455 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 MFSD5Q6N075 450 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 LRSAM1Q6UWE0 723 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 GPBP1Q86WP2 473 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 CCDC65Q8IXS2 484 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 CKAP2LQ8IYA6 745 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 SPATA20Q8TB22 786 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 GLG1Q92896 1179 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 TRIM9Q9C026 710 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 NAT10Q9H0A0 1025 aaKnown RBP10.57□□□□□ -0.72
YBX3-215ENST00000544504 ANO10Q9NW15 660 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 DACH1Q9UI36 760 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 KCNG1Q9UIX4 513 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 MSRAQ9UJ68 235 aa10.57□□□□□ -0.72
YBX3-215ENST00000544504 WDFY4Q6ZS81 3184 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 GRXCR1A8MXD5 290 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 E9PMD0 336 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 ZEB2O60315 1214 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 OATP04181 439 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 HOXD8P13378 290 aaPredicted RBP10.56□□□□□ -0.72
YBX3-215ENST00000544504 SLC12A3P55017 1021 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 ASIC1P78348 528 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 PRKCEQ02156 737 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 PSMD2Q13200 908 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 PNOCQ13519 176 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 DHX8Q14562 1220 aaKnown RBP10.56□□□□□ -0.72
YBX3-215ENST00000544504 ECM1Q16610 540 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 STX1AQ16623 288 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 HSDL1Q3SXM5 330 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 XKR9Q5GH70 373 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 CT47A1Q5JQC4 288 aaPredicted RBP10.56□□□□□ -0.72
YBX3-215ENST00000544504 TMEM240Q5SV17 173 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 PSRC1Q6PGN9 363 aaPredicted RBP10.56□□□□□ -0.72
YBX3-215ENST00000544504 C16orf59Q7L2K0 433 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 KCNK18Q7Z418 384 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 TLK2Q86UE8 772 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 CCDC60Q8IWA6 550 aaPredicted RBP10.56□□□□□ -0.72
YBX3-215ENST00000544504 PIGOQ8TEQ8 1089 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 BBXQ8WY36 941 aaPredicted RBP10.56□□□□□ -0.72
YBX3-215ENST00000544504 JPH2Q9BR39 696 aaPredicted RBP10.56□□□□□ -0.72
YBX3-215ENST00000544504 BHMT2Q9H2M3 363 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 EPHX3Q9H6B9 360 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 SLC28A3Q9HAS3 691 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 EXOC1Q9NV70 894 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 ERAP1Q9NZ08 941 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 TBX21Q9UL17 535 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 ODF2LQ9ULJ1 636 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 GNEQ9Y223 722 aaKnown RBP10.56□□□□□ -0.72
YBX3-215ENST00000544504 PCDHA5Q9Y5H7 936 aa10.56□□□□□ -0.72
YBX3-215ENST00000544504 A6NJR5 290 aa10.55□□□□□ -0.72
YBX3-215ENST00000544504 DYNC1LI2O43237 492 aaPredicted RBP10.55□□□□□ -0.72
YBX3-215ENST00000544504 GAS2O43903 313 aaKnown RBP10.55□□□□□ -0.72
YBX3-215ENST00000544504 HBP1O60381 514 aa10.55□□□□□ -0.72
YBX3-215ENST00000544504 TBCAO75347 108 aaKnown RBP10.55□□□□□ -0.72
YBX3-215ENST00000544504 KIF20AO95235 890 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms