RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 LRRC55Q6ZSA7 311 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 SGMS1Q86VZ5 419 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 MRPS27Q92552 414 aaKnown RBP20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 OSMRQ99650 979 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 APOL5Q9BWW9 433 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 ELAC1Q9H777 363 aaKnown RBP20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 RNF19AQ9NV58 838 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 RNF216Q9NWF9 866 aaPredicted RBP20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 CDH22Q9UJ99 828 aa20.29■□□□□ 0.84
CLSTN3-214ENST00000542663 BACH1O14867 736 aa20.28■□□□□ 0.84
CLSTN3-214ENST00000542663 GPR32O75388 356 aa20.28■□□□□ 0.84
CLSTN3-214ENST00000542663 FOSP01100 380 aaPredicted RBP20.28■□□□□ 0.84
CLSTN3-214ENST00000542663 LAG3P18627 525 aa20.28■□□□□ 0.84
CLSTN3-214ENST00000542663 CLK2P49760 499 aaKnown RBP20.28■□□□□ 0.84
CLSTN3-214ENST00000542663 CRYBB1P53674 252 aaPredicted RBP20.28■□□□□ 0.84
CLSTN3-214ENST00000542663 FUT2Q10981 343 aa20.28■□□□□ 0.84
CLSTN3-214ENST00000542663 ZNF484Q5JVG2 852 aa20.28■□□□□ 0.84
CLSTN3-214ENST00000542663 ODR4Q5SWX8 454 aa20.28■□□□□ 0.84
CLSTN3-214ENST00000542663 FAM160B1Q5W0V3 765 aa20.28■□□□□ 0.84
CLSTN3-214ENST00000542663 CASD1Q96PB1 797 aa20.28■□□□□ 0.84
CLSTN3-214ENST00000542663 ATP6V0A4Q9HBG4 840 aa20.28■□□□□ 0.84
CLSTN3-214ENST00000542663 ZNF302Q9NR11 478 aa20.28■□□□□ 0.84
CLSTN3-214ENST00000542663 FAM86B1E9PN63 330 aa20.27■□□□□ 0.84
CLSTN3-214ENST00000542663 VTNP04004 478 aa20.27■□□□□ 0.84
CLSTN3-214ENST00000542663 FAM86B2P0C5J1 330 aa20.27■□□□□ 0.84
CLSTN3-214ENST00000542663 SP100P23497 879 aaPredicted RBP20.27■□□□□ 0.84
CLSTN3-214ENST00000542663 ADCY7P51828 1080 aa20.27■□□□□ 0.84
CLSTN3-214ENST00000542663 NECTIN1Q15223 517 aa20.27■□□□□ 0.84
CLSTN3-214ENST00000542663 PPP1R18Q6NYC8 613 aa20.27■□□□□ 0.84
CLSTN3-214ENST00000542663 LLGL2Q6P1M3 1020 aa20.27■□□□□ 0.84
CLSTN3-214ENST00000542663 PDXDC2PQ6P474 469 aa20.27■□□□□ 0.84
CLSTN3-214ENST00000542663 NIPA1Q7RTP0 329 aa20.27■□□□□ 0.84
CLSTN3-214ENST00000542663 TEX2Q8IWB9 1127 aa20.27■□□□□ 0.84
CLSTN3-214ENST00000542663 TCF25Q9BQ70 676 aa20.27■□□□□ 0.84
CLSTN3-214ENST00000542663 VPS13AQ96RL7 3174 aa20.27■□□□□ 0.84
CLSTN3-214ENST00000542663 C2orf16Q68DN1 1984 aa20.26■□□□□ 0.83
CLSTN3-214ENST00000542663 ZFHX2Q9C0A1 2572 aaPredicted RBP20.26■□□□□ 0.83
CLSTN3-214ENST00000542663 IGLV3-22A0A075B6J6 115 aa20.26■□□□□ 0.83
CLSTN3-214ENST00000542663 GFRA3O60609 400 aa20.26■□□□□ 0.83
CLSTN3-214ENST00000542663 SRGAP2BP0DMP2 458 aa20.26■□□□□ 0.83
CLSTN3-214ENST00000542663 PBX3P40426 434 aa20.26■□□□□ 0.83
CLSTN3-214ENST00000542663 CREB3L3Q68CJ9 461 aa20.26■□□□□ 0.83
CLSTN3-214ENST00000542663 SWSAP1Q6NVH7 229 aa20.26■□□□□ 0.83
CLSTN3-214ENST00000542663 APOA5Q6Q788 366 aa20.26■□□□□ 0.83
CLSTN3-214ENST00000542663 KCNT2Q6UVM3 1135 aa20.26■□□□□ 0.83
CLSTN3-214ENST00000542663 CRYGNQ8WXF5 182 aa20.26■□□□□ 0.83
CLSTN3-214ENST00000542663 TMEM117Q9H0C3 514 aa20.26■□□□□ 0.83
CLSTN3-214ENST00000542663 ENTPD7Q9NQZ7 604 aa20.26■□□□□ 0.83
CLSTN3-214ENST00000542663 SMCO2A6NFE2 343 aa20.25■□□□□ 0.83
CLSTN3-214ENST00000542663 AP3B2Q13367 1082 aa20.25■□□□□ 0.83
CLSTN3-214ENST00000542663 RIPOR3Q96MK2 946 aa20.25■□□□□ 0.83
CLSTN3-214ENST00000542663 MAFBQ9Y5Q3 323 aaPredicted RBP20.25■□□□□ 0.83
CLSTN3-214ENST00000542663 DMDP11532 3685 aa20.24■□□□□ 0.83
CLSTN3-214ENST00000542663 ADAMTS3O15072 1205 aa20.24■□□□□ 0.83
CLSTN3-214ENST00000542663 HOXB8P17481 243 aaPredicted RBP20.24■□□□□ 0.83
CLSTN3-214ENST00000542663 ZNF76P36508 570 aa20.24■□□□□ 0.83
CLSTN3-214ENST00000542663 MIS18BP1Q6P0N0 1132 aa20.24■□□□□ 0.83
CLSTN3-214ENST00000542663 PLA2G4DQ86XP0 818 aa20.24■□□□□ 0.83
CLSTN3-214ENST00000542663 BBXQ8WY36 941 aaPredicted RBP20.24■□□□□ 0.83
CLSTN3-214ENST00000542663 ATOH1Q92858 354 aaPredicted RBP20.24■□□□□ 0.83
CLSTN3-214ENST00000542663 NGRNQ9NPE2 291 aaKnown RBP20.24■□□□□ 0.83
CLSTN3-214ENST00000542663 RBM28Q9NW13 759 aaKnown RBP20.24■□□□□ 0.83
CLSTN3-214ENST00000542663 BARHL2Q9NY43 387 aa20.24■□□□□ 0.83
CLSTN3-214ENST00000542663 PUF60Q9UHX1 559 aaKnown RBP20.24■□□□□ 0.83
CLSTN3-214ENST00000542663 BRPF3Q9ULD4 1205 aa20.24■□□□□ 0.83
CLSTN3-214ENST00000542663 V9GY48 417 aaPredicted RBP20.24■□□□□ 0.83
CLSTN3-214ENST00000542663 H0Y858 1186 aa20.23■□□□□ 0.83
CLSTN3-214ENST00000542663 IPO5O00410 1097 aaKnown RBP20.23■□□□□ 0.83
CLSTN3-214ENST00000542663 CLCN3P51790 818 aa20.23■□□□□ 0.83
CLSTN3-214ENST00000542663 CLLU1OSQ5K130 101 aa20.23■□□□□ 0.83
CLSTN3-214ENST00000542663 TRMT1LQ7Z2T5 733 aaKnown RBP20.23■□□□□ 0.83
CLSTN3-214ENST00000542663 LRRC43Q8N309 656 aa20.23■□□□□ 0.83
CLSTN3-214ENST00000542663 METTL13Q8N6R0 699 aa20.23■□□□□ 0.83
CLSTN3-214ENST00000542663 LINC01465Q8N7H1 131 aa20.23■□□□□ 0.83
CLSTN3-214ENST00000542663 KREMEN2Q8NCW0 462 aa20.23■□□□□ 0.83
CLSTN3-214ENST00000542663 ZNF558Q96NG5 402 aa20.23■□□□□ 0.83
CLSTN3-214ENST00000542663 POMKQ9H5K3 350 aa20.23■□□□□ 0.83
CLSTN3-214ENST00000542663 C2CD4DB7Z1M9 353 aa20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 hCG_1984214I3L0E3 225 aa20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 BRD1O95696 1058 aa20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 CYP3A4P08684 503 aa20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 ZBTB33Q86T24 672 aa20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 ECHDC2Q86YB7 292 aa20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 CKAP2LQ8IYA6 745 aa20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 ZNF713Q8N859 430 aaPredicted RBP20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 ESYT1Q9BSJ8 1104 aa20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 ADAMTS10Q9H324 1103 aa20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 SMOC2Q9H3U7 446 aa20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 TSHZ2Q9NRE2 1034 aa20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 NR2E1Q9Y466 385 aa20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 HCFC2Q9Y5Z7 792 aa20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 SPTBN4Q9H254 2564 aa20.22■□□□□ 0.83
CLSTN3-214ENST00000542663 HOXA2O43364 376 aa20.21■□□□□ 0.83
CLSTN3-214ENST00000542663 PPM1AP35813 382 aa20.21■□□□□ 0.83
CLSTN3-214ENST00000542663 NLRP11P59045 1033 aaKnown RBP20.21■□□□□ 0.83
CLSTN3-214ENST00000542663 RTN1Q16799 776 aa20.21■□□□□ 0.83
CLSTN3-214ENST00000542663 JAKMIP3Q5VZ66 844 aa20.21■□□□□ 0.83
CLSTN3-214ENST00000542663 SYNE3Q6ZMZ3 975 aa20.21■□□□□ 0.83
CLSTN3-214ENST00000542663 TMC7Q7Z402 723 aa20.21■□□□□ 0.83
CLSTN3-214ENST00000542663 CASP10Q92851 521 aa20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms