RNA–Protein interactions for RNA: ENST00000541953.5

CLSTN3-213, Transcript of calsyntenin 3, humanhuman

TSL 5

Gene CLSTN3, Length 570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-213ENST00000541953 PRSS33Q8NF86 280 aa17.57■□□□□ 0.4
CLSTN3-213ENST00000541953 GJA10Q969M2 543 aa17.57■□□□□ 0.4
CLSTN3-213ENST00000541953 TLE6Q9H808 572 aa17.57■□□□□ 0.4
CLSTN3-213ENST00000541953 MAFBQ9Y5Q3 323 aaPredicted RBP17.57■□□□□ 0.4
CLSTN3-213ENST00000541953 hCG_1984214I3L0E3 225 aa17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 FSCN2O14926 492 aa17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 ZNF862O60290 1169 aa17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 UGCGQ16739 394 aa17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 DUSP6Q16828 381 aa17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 TSGA10IPQ3SY00 556 aa17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 SPOUT1Q5T280 376 aaKnown RBP17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 IER5LQ5T953 404 aa17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 PLPP4Q5VZY2 271 aa17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 MIS18BP1Q6P0N0 1132 aa17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 LRRC71Q8N4P6 559 aa17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 ZNF713Q8N859 430 aaPredicted RBP17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 EDAQ92838 391 aa17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 ZNF577Q9BSK1 485 aa17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 APOL5Q9BWW9 433 aa17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 UPF3BQ9BZI7 483 aaKnown RBP17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 TLR9Q9NR96 1032 aa17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 NAP1L2Q9ULW6 460 aaPredicted RBP17.56■□□□□ 0.4
CLSTN3-213ENST00000541953 HIDE1A8MVS5 230 aa17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 CRYBB1P53674 252 aaPredicted RBP17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 FAM189BP81408 668 aa17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 KCNC3Q14003 757 aa17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 CBX2Q14781 532 aaPredicted RBP17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 RNF20Q5VTR2 975 aa17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 SLC24A5Q71RS6 500 aa17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 THNSL1Q8IYQ7 743 aa17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 METTL13Q8N6R0 699 aa17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 SUSD6Q92537 303 aa17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 TNPO1Q92973 898 aaKnown RBP17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 PHKBQ93100 1093 aa17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 CASD1Q96PB1 797 aa17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 ZMYND12Q9H0C1 365 aa17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 C1orf112Q9NSG2 853 aa17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 GABBR1Q9UBS5 961 aa17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 ZDBF2Q9HCK1 2354 aa17.55■□□□□ 0.4
CLSTN3-213ENST00000541953 FGFR4P22455 802 aa17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 METAP2P50579 478 aaKnown RBP eCLIP17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 PRR16Q569H4 304 aa17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 CLLU1OSQ5K130 101 aa17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 TRIM67Q6ZTA4 783 aa17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 TEX2Q8IWB9 1127 aa17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 CKAP2LQ8IYA6 745 aa17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 MICAL1Q8TDZ2 1067 aa17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 BBXQ8WY36 941 aaPredicted RBP17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 PPP2R3CQ969Q6 453 aa17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 RPGRIP1Q96KN7 1286 aa17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 ADAMTS10Q9H324 1103 aa17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 TMEM161AQ9NX61 479 aa17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 PCDHB12Q9Y5F1 795 aa17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 CFAP54Q96N23 3096 aa17.54■□□□□ 0.4
CLSTN3-213ENST00000541953 NID2Q14112 1375 aa17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 ESYT2A0FGR8 921 aa17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 TMEM221A6NGB7 291 aa17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 M0R296 226 aa17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 GPR182O15218 404 aa17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 SP100P23497 879 aaPredicted RBP17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 NLRP11P59045 1033 aaKnown RBP17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 ZXDAP98168 799 aa17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 UBE3AQ05086 875 aa17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 DRP2Q13474 957 aa17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 ZNF746Q6NUN9 644 aaPredicted RBP17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 LLGL2Q6P1M3 1020 aa17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 SYCE2Q6PIF2 218 aa17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 Q6ZUG5 572 aa17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 REXO1Q8N1G1 1221 aaKnown RBP17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 FEZF2Q8TBJ5 459 aa17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 BRF1Q92994 677 aa17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 ATP6V0A4Q9HBG4 840 aa17.53■□□□□ 0.4
CLSTN3-213ENST00000541953 VPS13AQ96RL7 3174 aa17.52■□□□□ 0.4
CLSTN3-213ENST00000541953 TMEM150BA6NC51 233 aa17.52■□□□□ 0.4
CLSTN3-213ENST00000541953 CSDE1O75534 798 aaKnown RBP17.52■□□□□ 0.4
CLSTN3-213ENST00000541953 ATF7P17544 494 aaPredicted RBP17.52■□□□□ 0.4
CLSTN3-213ENST00000541953 RCAN1P53805 252 aa17.52■□□□□ 0.4
CLSTN3-213ENST00000541953 NTRK3Q16288 839 aa17.52■□□□□ 0.4
CLSTN3-213ENST00000541953 PHF7Q9BWX1 381 aaPredicted RBP17.52■□□□□ 0.4
CLSTN3-213ENST00000541953 S1PR5Q9H228 398 aa17.52■□□□□ 0.4
CLSTN3-213ENST00000541953 TBC1D22BQ9NU19 505 aa17.52■□□□□ 0.4
CLSTN3-213ENST00000541953 PCDHA10Q9Y5I2 948 aa17.52■□□□□ 0.4
CLSTN3-213ENST00000541953 MSH4O15457 936 aa17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 CIITAP33076 1130 aa17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 VCPP55072 806 aaKnown RBP17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 SETQ01105 290 aaPredicted RBP17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 PRKCEQ02156 737 aa17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 EFCAB12Q6NXP0 572 aa17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 KCNT2Q6UVM3 1135 aa17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 ECHDC2Q86YB7 292 aa17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 SMAP1Q8IYB5 467 aaPredicted RBP17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 MRPS27Q92552 414 aaKnown RBP17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 KCNB2Q92953 911 aa17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 JAKMIP1Q96N16 626 aaKnown RBP17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 TCF25Q9BQ70 676 aa17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 TMEM117Q9H0C3 514 aa17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 GLT8D2Q9H1C3 349 aa17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 ELAC1Q9H777 363 aaKnown RBP17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 VPS54Q9P1Q0 977 aa17.51■□□□□ 0.39
CLSTN3-213ENST00000541953 AKT3Q9Y243 479 aa17.51■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms