RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 PARVGQ9HBI0 331 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 KCNH7Q9NS40 1196 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 ARHGEF35A5YM69 484 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 CALUO43852 315 aaPredicted RBP18.48■□□□□ 0.55
USP28-208ENST00000540438 ENTPD3O75355 529 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 EIF3JO75822 258 aaKnown RBP18.48■□□□□ 0.55
USP28-208ENST00000540438 FOSP01100 380 aaPredicted RBP18.48■□□□□ 0.55
USP28-208ENST00000540438 KRT14P02533 472 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 CYP3A4P08684 503 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 ITGA4P13612 1032 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 GPS2Q13227 327 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 ZNF211Q13398 564 aaPredicted RBP18.48■□□□□ 0.55
USP28-208ENST00000540438 UGCGQ16739 394 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 MBOAT7Q96N66 472 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 TAAR1Q96RJ0 339 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 VCPKMTQ9H867 229 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 LCMT1Q9UIC8 334 aa18.48■□□□□ 0.55
USP28-208ENST00000540438 ATMINO43313 823 aaPredicted RBP18.47■□□□□ 0.55
USP28-208ENST00000540438 HEXIM1O94992 359 aaKnown RBP18.47■□□□□ 0.55
USP28-208ENST00000540438 SPP2Q13103 211 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 ZKSCAN4Q969J2 545 aaPredicted RBP18.47■□□□□ 0.55
USP28-208ENST00000540438 DDX47Q9H0S4 455 aaKnown RBP18.47■□□□□ 0.55
USP28-208ENST00000540438 ATP1A2P50993 1020 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 CDK17Q00537 523 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 EPHA7Q15375 998 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 ZSCAN26Q16670 478 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 CPNE8Q86YQ8 564 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 SAAL1Q96ER3 474 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 TYW1Q9NV66 732 aaKnown RBP18.47■□□□□ 0.55
USP28-208ENST00000540438 STK32BQ9NY57 414 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 ZMYM2Q9UBW7 1377 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 FRMD3A2A2Y4 597 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 AGPSO00116 658 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 PRELPP51888 382 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 FAM151AQ8WW52 585 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 SIX2Q9NPC8 291 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 NAGPAQ9UK23 515 aa18.47■□□□□ 0.55
USP28-208ENST00000540438 BRCA2P51587 3418 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 IGSF9BQ9UPX0 1349 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 ANO9A1A5B4 782 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 SLC16A4O15374 487 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 EVI5O60447 810 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 CAP2P40123 477 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 HLTFQ14527 1009 aaKnown RBP eCLIP18.46■□□□□ 0.55
USP28-208ENST00000540438 DRAP1Q14919 205 aaPredicted RBP18.46■□□□□ 0.55
USP28-208ENST00000540438 WDR93Q6P2C0 686 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 AEBP2Q6ZN18 517 aaPredicted RBP18.46■□□□□ 0.55
USP28-208ENST00000540438 GBP6Q6ZN66 633 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 EPM2AIP1Q7L775 607 aaPredicted RBP18.46■□□□□ 0.55
USP28-208ENST00000540438 MIER3Q7Z3K6 550 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 OR2W6PQ8NHA6 318 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 SLC20A1Q8WUM9 679 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 ARL8AQ96BM9 186 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 CCDC43Q96MW1 224 aaKnown RBP18.46■□□□□ 0.55
USP28-208ENST00000540438 DNAJC12Q9UKB3 198 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 RIPK3Q9Y572 518 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 COL4A5P29400 1685 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 FOCADQ5VW36 1801 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 DDX3XO00571 662 aaKnown RBP eCLIP18.46■□□□□ 0.551e-9■■■■□ 20
USP28-208ENST00000540438 ITGB3BPQ13352 177 aaPredicted RBP18.46■□□□□ 0.55
USP28-208ENST00000540438 MTMR2Q13614 643 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 TUBB2AQ13885 445 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 NAB2Q15742 525 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 C2CD6Q53TS8 623 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 PADI6Q6TGC4 694 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 DAAM2Q86T65 1068 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 DAW1Q8N136 415 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 TUBB2BQ9BVA1 445 aa18.46■□□□□ 0.55
USP28-208ENST00000540438 CELF4Q9BZC1 486 aaKnown RBP18.46■□□□□ 0.55
USP28-208ENST00000540438 EPC2Q52LR7 807 aa18.45■□□□□ 0.54
USP28-208ENST00000540438 LMBRD2Q68DH5 695 aaPredicted RBP18.45■□□□□ 0.54
USP28-208ENST00000540438 GLT8D2Q9H1C3 349 aa18.45■□□□□ 0.54
USP28-208ENST00000540438 NR2E1Q9Y466 385 aa18.45■□□□□ 0.54
USP28-208ENST00000540438 GOLGA6BA6NDN3 693 aa18.45■□□□□ 0.54
USP28-208ENST00000540438 ATP8B1O43520 1251 aa18.45■□□□□ 0.54
USP28-208ENST00000540438 DPY19L2P1Q6NXN4 242 aa18.45■□□□□ 0.54
USP28-208ENST00000540438 GBP3Q9H0R5 595 aa18.45■□□□□ 0.54
USP28-208ENST00000540438 TRAF3IP3Q9Y228 551 aa18.45■□□□□ 0.54
USP28-208ENST00000540438 PITPNM2Q9BZ72 1349 aa18.45■□□□□ 0.54
USP28-208ENST00000540438 CCDC169A6NNP5 214 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 PDXKO00764 312 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 PEX3P56589 373 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 HDLBPQ00341 1268 aaKnown RBP18.44■□□□□ 0.54
USP28-208ENST00000540438 EDRF1Q3B7T1 1238 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 ZNF720Q7Z2F6 126 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 FLAD1Q8NFF5 587 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 CHURC1Q8WUH1 139 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 AGPAT3Q9NRZ7 376 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 RSPH14Q9UHP6 348 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 SSU72P8A0A1W2PR75 194 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 GNA14O95837 355 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 CIITAP33076 1130 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 LNX1Q8TBB1 728 aaPredicted RBP18.44■□□□□ 0.54
USP28-208ENST00000540438 TOPORSQ9NS56 1045 aaPredicted RBP18.44■□□□□ 0.54
USP28-208ENST00000540438 ZHX2Q9Y6X8 837 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 LRRC37AA6NMS7 1700 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 FOXN3O00409 490 aaPredicted RBP18.44■□□□□ 0.54
USP28-208ENST00000540438 RAD51CO43502 376 aa18.44■□□□□ 0.54
USP28-208ENST00000540438 TCP1P17987 556 aaKnown RBP18.44■□□□□ 0.54
USP28-208ENST00000540438 MRPS9P82933 396 aaKnown RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms