RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 PRR23BQ6ZRT6 265 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 STOX1Q6ZVD7 989 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 SLC39A11Q8N1S5 342 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 SLC22A17Q8WUG5 538 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 GPATCH3Q96I76 525 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 TMX1Q9H3N1 280 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 HCSTQ9UBK5 93 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 MYO15AQ9UKN7 3530 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 FANCMQ8IYD8 2048 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 KDM3AQ9Y4C1 1321 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 EIF4E1BA6NMX2 242 aaKnown RBP10.6□□□□□ -0.71
USP28-205ENST00000537706 C1QTNF9BB2RNN3 333 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 C9IYK1 514 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 C1QTNF9P0C862 333 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 SNHG28P0DPA3 235 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 FGFR1P11362 822 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 MARK3P27448 753 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 QRICH1Q2TAL8 776 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 VPS52Q8N1B4 723 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 NELL1Q92832 810 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 KLHL5Q96PQ7 755 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 NELL2Q99435 816 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 AMNQ9BXJ7 453 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 SMARCAD1Q9H4L7 1026 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 STK39Q9UEW8 545 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 USP24Q9UPU5 2620 aa10.6□□□□□ -0.71
USP28-205ENST00000537706 FAM170BA6NMN3 283 aa10.59□□□□□ -0.71
USP28-205ENST00000537706 SPATA31C2B4DYI2 1134 aa10.59□□□□□ -0.71
USP28-205ENST00000537706 KLRC2P26717 231 aa10.59□□□□□ -0.71
USP28-205ENST00000537706 TCF7P36402 384 aaPredicted RBP10.59□□□□□ -0.71
USP28-205ENST00000537706 LIMK1P53667 647 aa10.59□□□□□ -0.71
USP28-205ENST00000537706 RING1Q06587 406 aa10.59□□□□□ -0.71
USP28-205ENST00000537706 TMEM62Q0P6H9 643 aa10.59□□□□□ -0.71
USP28-205ENST00000537706 TMEM266Q2M3C6 531 aa10.59□□□□□ -0.71
USP28-205ENST00000537706 ZBTB41Q5SVQ8 909 aa10.59□□□□□ -0.71
USP28-205ENST00000537706 ARHGAP30Q7Z6I6 1101 aaPredicted RBP10.59□□□□□ -0.71
USP28-205ENST00000537706 ADGRF4Q8IZF3 695 aa10.59□□□□□ -0.71
USP28-205ENST00000537706 C12orf50Q8NA57 414 aaPredicted RBP10.59□□□□□ -0.71
USP28-205ENST00000537706 GPKOWQ92917 476 aaPredicted RBP eCLIP10.59□□□□□ -0.71
USP28-205ENST00000537706 MRPL9Q9BYD2 267 aaKnown RBP10.59□□□□□ -0.71
USP28-205ENST00000537706 ZBP1Q9H171 429 aa10.59□□□□□ -0.71
USP28-205ENST00000537706 IRAK3Q9Y616 596 aa10.59□□□□□ -0.71
USP28-205ENST00000537706 CLUHO75153 1309 aa10.59□□□□□ -0.71
USP28-205ENST00000537706 GCOM1H8Y6P7 765 aaPredicted RBP10.58□□□□□ -0.72
USP28-205ENST00000537706 TAF4O00268 1085 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 POLR2MP0CAP2 368 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 GOLGA8HP0CJ92 632 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 CTSAP10619 480 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 RBM25P49756 843 aaKnown RBP10.58□□□□□ -0.72
USP28-205ENST00000537706 METAP2P50579 478 aaKnown RBP eCLIP10.58□□□□□ -0.72
USP28-205ENST00000537706 PFKPQ01813 784 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 MLF2Q15773 248 aaPredicted RBP10.58□□□□□ -0.72
USP28-205ENST00000537706 LPAL2Q16609 132 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 NLRX1Q86UT6 975 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 CMASQ8NFW8 434 aaPredicted RBP10.58□□□□□ -0.72
USP28-205ENST00000537706 SEPT1Q8WYJ6 367 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 CASD1Q96PB1 797 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 SENP7Q9BQF6 1050 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 WDR6Q9NNW5 1121 aaKnown RBP10.58□□□□□ -0.72
USP28-205ENST00000537706 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP10.58□□□□□ -0.72
USP28-205ENST00000537706 GINS2Q9Y248 185 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 MRPS17Q9Y2R5 130 aaKnown RBP10.58□□□□□ -0.72
USP28-205ENST00000537706 PCDHA2Q9Y5H9 948 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 SRRM3A6NNA2 597 aaPredicted RBP10.58□□□□□ -0.72
USP28-205ENST00000537706 LRRN2O75325 713 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 PBX3P40426 434 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 GHRHRQ02643 423 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 ASPRV1Q53RT3 343 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 CCDC178Q5BJE1 867 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 ANAPC4Q9UJX5 808 aa10.58□□□□□ -0.72
USP28-205ENST00000537706 SPTBN2O15020 2390 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 SMIM35A0A1B0GVV1 85 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 MGEA5O60502 916 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 FAM189BP81408 668 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 MARCH8Q5T0T0 291 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 FCHSD1Q86WN1 690 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 IL31RAQ8NI17 732 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 RSPH1Q8WYR4 309 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 PHKBQ93100 1093 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 INPP4AQ96PE3 977 aaPredicted RBP10.57□□□□□ -0.72
USP28-205ENST00000537706 RHOBTB2Q9BYZ6 727 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 AZI2Q9H6S1 392 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 PIDD1Q9HB75 910 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 VAT1LQ9HCJ6 419 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 PRMT8Q9NR22 394 aaPredicted RBP10.57□□□□□ -0.72
USP28-205ENST00000537706 ECHDC1Q9NTX5 307 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 ST3GAL5Q9UNP4 418 aa10.57□□□□□ -0.72
USP28-205ENST00000537706 ZFP37Q9Y6Q3 630 aaPredicted RBP10.57□□□□□ -0.72
USP28-205ENST00000537706 TRIM6-TRIM34B2RNG4 842 aa10.56□□□□□ -0.72
USP28-205ENST00000537706 INSRRP14616 1297 aa10.56□□□□□ -0.72
USP28-205ENST00000537706 ZSCAN20P17040 1043 aaPredicted RBP10.56□□□□□ -0.72
USP28-205ENST00000537706 HOXA13P31271 388 aaPredicted RBP10.56□□□□□ -0.72
USP28-205ENST00000537706 SNW1Q13573 536 aaKnown RBP10.56□□□□□ -0.72
USP28-205ENST00000537706 SIM2Q14190 667 aaPredicted RBP10.56□□□□□ -0.72
USP28-205ENST00000537706 DDX53Q86TM3 631 aaKnown RBP10.56□□□□□ -0.72
USP28-205ENST00000537706 BBXQ8WY36 941 aaPredicted RBP10.56□□□□□ -0.72
USP28-205ENST00000537706 ZCCHC14Q8WYQ9 949 aaKnown RBP10.56□□□□□ -0.72
USP28-205ENST00000537706 ZFP91Q96JP5 570 aaPredicted RBP10.56□□□□□ -0.72
USP28-205ENST00000537706 CDHR1Q96JP9 859 aa10.56□□□□□ -0.72
USP28-205ENST00000537706 LTB4R2Q9NPC1 389 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms