RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 GPATCH3Q96I76 525 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 LIMD1Q9UGP4 676 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 FBXL21Q9UKT6 434 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 LRFN2Q9ULH4 789 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 LZTS1Q9Y250 596 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 TELO2Q9Y4R8 837 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 HCFC2Q9Y5Z7 792 aa9.54□□□□□ -0.88
CD44-232ENST00000531118 BAZ2BQ9UIF8 2168 aaKnown RBP9.54□□□□□ -0.88
CD44-232ENST00000531118 MBLAC1A4D2B0 266 aaPredicted RBP9.53□□□□□ -0.88
CD44-232ENST00000531118 EOMESO95936 686 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 CFHP08603 1231 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 LAG3P18627 525 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 SARSP49591 514 aaKnown RBP9.53□□□□□ -0.88
CD44-232ENST00000531118 SP4Q02446 784 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 COL9A2Q14055 689 aaPredicted RBP9.53□□□□□ -0.88
CD44-232ENST00000531118 NEDD9Q14511 834 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 GRIK4Q16099 956 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 RARS2Q5T160 578 aaKnown RBP9.53□□□□□ -0.88
CD44-232ENST00000531118 VPS53Q5VIR6 699 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 CYFIP1Q7L576 1253 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 VSIG10LQ86VR7 867 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 DNAJB3Q8WWF6 145 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 KDM4CQ9H3R0 1056 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 NGRNQ9NPE2 291 aaKnown RBP9.53□□□□□ -0.88
CD44-232ENST00000531118 USTQ9Y2C2 406 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 TRPV2Q9Y5S1 764 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 FRMPD4Q14CM0 1322 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 IGSF9BQ9UPX0 1349 aa9.53□□□□□ -0.88
CD44-232ENST00000531118 ANKRD11Q6UB99 2663 aaPredicted RBP9.52□□□□□ -0.88
CD44-232ENST00000531118 DHX16O60231 1041 aaKnown RBP9.52□□□□□ -0.89
CD44-232ENST00000531118 HOXA13P31271 388 aaPredicted RBP9.52□□□□□ -0.89
CD44-232ENST00000531118 ATXN1P54253 815 aaKnown RBP9.52□□□□□ -0.89
CD44-232ENST00000531118 PLCB3Q01970 1234 aa9.52□□□□□ -0.89
CD44-232ENST00000531118 GNPTABQ3T906 1256 aa9.52□□□□□ -0.89
CD44-232ENST00000531118 ASPRV1Q53RT3 343 aa9.52□□□□□ -0.89
CD44-232ENST00000531118 KIAA0319Q5VV43 1072 aa9.52□□□□□ -0.89
CD44-232ENST00000531118 STOX1Q6ZVD7 989 aa9.52□□□□□ -0.89
CD44-232ENST00000531118 SUMF1Q8NBK3 374 aa9.52□□□□□ -0.89
CD44-232ENST00000531118 INPP4AQ96PE3 977 aaPredicted RBP9.52□□□□□ -0.89
CD44-232ENST00000531118 FAM49AQ9H0Q0 323 aaPredicted RBP9.52□□□□□ -0.89
CD44-232ENST00000531118 TMX1Q9H3N1 280 aa9.52□□□□□ -0.89
CD44-232ENST00000531118 CWH43Q9H720 699 aa9.52□□□□□ -0.89
CD44-232ENST00000531118 CYP26B1Q9NR63 512 aa9.52□□□□□ -0.89
CD44-232ENST00000531118 DBR1Q9UK59 544 aaKnown RBP9.52□□□□□ -0.89
CD44-232ENST00000531118 RALYQ9UKM9 306 aaKnown RBP9.52□□□□□ -0.89
CD44-232ENST00000531118 PADI3Q9ULW8 664 aa9.52□□□□□ -0.89
CD44-232ENST00000531118 SQORQ9Y6N5 450 aa9.52□□□□□ -0.89
CD44-232ENST00000531118 ZMYM6O95789 1325 aa9.52□□□□□ -0.89
CD44-232ENST00000531118 NEDD4P46934 1319 aa9.52□□□□□ -0.89
CD44-232ENST00000531118 EVPLQ92817 2033 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 M0QZ92 97 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 MGEA5O60502 916 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 RPLP2P05387 115 aaKnown RBP9.51□□□□□ -0.89
CD44-232ENST00000531118 ADRB1P08588 477 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 SP9P0CG40 484 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 RFX1P22670 979 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 MARK3P27448 753 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 GCGRP47871 477 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 TDGQ13569 410 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 MARCH8Q5T0T0 291 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 XRRA1Q6P2D8 792 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 TBC1D10CQ8IV04 446 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 PNMA1Q8ND90 353 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 ZBTB10Q96DT7 871 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 TTC14Q96N46 770 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 AMNQ9BXJ7 453 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 JMJD4Q9H9V9 463 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 ZBTB40Q9NUA8 1239 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 TYW1Q9NV66 732 aaKnown RBP9.51□□□□□ -0.89
CD44-232ENST00000531118 DZANK1Q9NVP4 752 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 CDV3Q9UKY7 258 aaKnown RBP9.51□□□□□ -0.89
CD44-232ENST00000531118 CEP295Q9C0D2 2601 aa9.51□□□□□ -0.89
CD44-232ENST00000531118 MYH15Q9Y2K3 1946 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 FIBPO43427 364 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 NARSO43776 548 aaKnown RBP9.5□□□□□ -0.89
CD44-232ENST00000531118 PPP1R11O60927 126 aaPredicted RBP9.5□□□□□ -0.89
CD44-232ENST00000531118 CLASP2O75122 1294 aaKnown RBP9.5□□□□□ -0.89
CD44-232ENST00000531118 MS4A1P11836 297 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 SDHBP21912 280 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 PPM1AP35813 382 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 TCF7P36402 384 aaPredicted RBP9.5□□□□□ -0.89
CD44-232ENST00000531118 PBX3P40426 434 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 MRPS9P82933 396 aaKnown RBP9.5□□□□□ -0.89
CD44-232ENST00000531118 TMEM62Q0P6H9 643 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 SMC1AQ14683 1233 aaKnown RBP9.5□□□□□ -0.89
CD44-232ENST00000531118 ALX1Q15699 326 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 TMEM266Q2M3C6 531 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 FAM102BQ5T8I3 360 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 CCDC149Q6ZUS6 474 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 TMC7Q7Z402 723 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 C12orf76Q8N812 135 aaPredicted RBP9.5□□□□□ -0.89
CD44-232ENST00000531118 FEZF2Q8TBJ5 459 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 TBC1D17Q9HA65 648 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 PLSCR2Q9NRY7 297 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 MAP3K20Q9NYL2 800 aaKnown RBP9.5□□□□□ -0.89
CD44-232ENST00000531118 NCDNQ9UBB6 729 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 PUF60Q9UHX1 559 aaKnown RBP9.5□□□□□ -0.89
CD44-232ENST00000531118 DDX19BQ9UMR2 479 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 PCDHB7Q9Y5E2 793 aa9.5□□□□□ -0.89
CD44-232ENST00000531118 KDM3AQ9Y4C1 1321 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms