RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 VTNP04004 478 aa23.13■■□□□ 1.29
VPS28-206ENST00000526734 NFX1Q12986 1120 aaKnown RBP23.13■■□□□ 1.29
VPS28-206ENST00000526734 GRB10Q13322 594 aa23.13■■□□□ 1.29
VPS28-206ENST00000526734 MTERF2Q49AM1 385 aa23.13■■□□□ 1.29
VPS28-206ENST00000526734 BANK1Q8NDB2 785 aa23.13■■□□□ 1.29
VPS28-206ENST00000526734 FBXO18Q8NFZ0 1043 aa23.13■■□□□ 1.29
VPS28-206ENST00000526734 NEK9Q8TD19 979 aa23.13■■□□□ 1.29
VPS28-206ENST00000526734 NOC2LQ9Y3T9 749 aaKnown RBP23.13■■□□□ 1.29
VPS28-206ENST00000526734 MTCH2Q9Y6C9 303 aa23.13■■□□□ 1.29
VPS28-206ENST00000526734 ADGRA3Q8IWK6 1321 aa23.12■■□□□ 1.29
VPS28-206ENST00000526734 DDX11L8A8MPP1 907 aa23.12■■□□□ 1.29
VPS28-206ENST00000526734 SPIRE1Q08AE8 756 aa23.12■■□□□ 1.29
VPS28-206ENST00000526734 C4orf19Q8IY42 314 aa23.12■■□□□ 1.29
VPS28-206ENST00000526734 LRRC71Q8N4P6 559 aa23.12■■□□□ 1.29
VPS28-206ENST00000526734 FIBCD1Q8N539 461 aa23.12■■□□□ 1.29
VPS28-206ENST00000526734 FBXO22Q8NEZ5 403 aa23.12■■□□□ 1.29
VPS28-206ENST00000526734 TMEM40Q8WWA1 233 aa23.12■■□□□ 1.29
VPS28-206ENST00000526734 LINC01599Q8WXQ3 324 aa23.12■■□□□ 1.29
VPS28-206ENST00000526734 OSMRQ99650 979 aa23.12■■□□□ 1.29
VPS28-206ENST00000526734 SUGCTQ9HAC7 445 aa23.12■■□□□ 1.29
VPS28-206ENST00000526734 RC3H2Q9HBD1 1191 aaKnown RBP23.12■■□□□ 1.29
VPS28-206ENST00000526734 PCDHA12Q9UN75 941 aa23.12■■□□□ 1.29
VPS28-206ENST00000526734 IGKV6-21A0A0C4DH24 114 aa23.11■■□□□ 1.29
VPS28-206ENST00000526734 NLRP11P59045 1033 aaKnown RBP23.11■■□□□ 1.29
VPS28-206ENST00000526734 TMEM266Q2M3C6 531 aa23.11■■□□□ 1.29
VPS28-206ENST00000526734 NCAPH2Q6IBW4 605 aa23.11■■□□□ 1.29
VPS28-206ENST00000526734 ANO5Q75V66 913 aa23.11■■□□□ 1.29
VPS28-206ENST00000526734 TBC1D32Q96NH3 1257 aa23.11■■□□□ 1.29
VPS28-206ENST00000526734 CEP89Q96ST8 783 aa23.11■■□□□ 1.29
VPS28-206ENST00000526734 ADAMTS10Q9H324 1103 aa23.11■■□□□ 1.29
VPS28-206ENST00000526734 ZSWIM4Q9H7M6 989 aa23.11■■□□□ 1.29
VPS28-206ENST00000526734 CDHR5Q9HBB8 845 aa23.11■■□□□ 1.29
VPS28-206ENST00000526734 ST3GAL5Q9UNP4 418 aa23.11■■□□□ 1.29
VPS28-206ENST00000526734 MYO9BQ13459 2157 aa23.11■■□□□ 1.29
VPS28-206ENST00000526734 CDH23Q9H251 3354 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 WDR81Q562E7 1941 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 DENND3A2RUS2 1198 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 RFXAPO00287 272 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 GAS2O43903 313 aaKnown RBP23.1■■□□□ 1.29
VPS28-206ENST00000526734 MAFO75444 373 aaPredicted RBP23.1■■□□□ 1.29
VPS28-206ENST00000526734 DGKIO75912 1065 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 EIF4BP23588 611 aaKnown RBP23.1■■□□□ 1.29
VPS28-206ENST00000526734 RFC5P40937 340 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 TRAPPC10P48553 1259 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 SARSP49591 514 aaKnown RBP23.1■■□□□ 1.29
VPS28-206ENST00000526734 GPC3P51654 580 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 GUCY1B3Q02153 619 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 GNL2Q13823 731 aaKnown RBP23.1■■□□□ 1.29
VPS28-206ENST00000526734 OTUD6AQ7L8S5 288 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 RTN4RL1Q86UN2 441 aaPredicted RBP23.1■■□□□ 1.29
VPS28-206ENST00000526734 FAM228AQ86W67 206 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 CMTR2Q8IYT2 770 aaKnown RBP23.1■■□□□ 1.29
VPS28-206ENST00000526734 SLC7A3Q8WY07 619 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 ZNF689Q96CS4 500 aaPredicted RBP23.1■■□□□ 1.29
VPS28-206ENST00000526734 SCLT1Q96NL6 688 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 LXNQ9BS40 222 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 TMX1Q9H3N1 280 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 CYP26B1Q9NR63 512 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 RGS18Q9NS28 235 aa23.1■■□□□ 1.29
VPS28-206ENST00000526734 CHD7Q9P2D1 2997 aa23.09■■□□□ 1.29
VPS28-206ENST00000526734 LPXNO60711 386 aa23.09■■□□□ 1.29
VPS28-206ENST00000526734 SLC24A5Q71RS6 500 aa23.09■■□□□ 1.29
VPS28-206ENST00000526734 SPRED2Q7Z698 418 aa23.09■■□□□ 1.29
VPS28-206ENST00000526734 ZNF410Q86VK4 478 aa23.09■■□□□ 1.29
VPS28-206ENST00000526734 CRIPAKQ8N1N5 446 aa23.09■■□□□ 1.29
VPS28-206ENST00000526734 GDPD5Q8WTR4 605 aa23.09■■□□□ 1.29
VPS28-206ENST00000526734 PPM1EQ8WY54 764 aa23.09■■□□□ 1.29
VPS28-206ENST00000526734 MTMR9Q96QG7 549 aa23.09■■□□□ 1.29
VPS28-206ENST00000526734 C17orf80Q9BSJ5 609 aa23.09■■□□□ 1.29
VPS28-206ENST00000526734 TTC12Q9H892 705 aaPredicted RBP23.09■■□□□ 1.29
VPS28-206ENST00000526734 THEGQ9P2T0 379 aa23.09■■□□□ 1.29
VPS28-206ENST00000526734 MTUS1Q9ULD2 1270 aa23.09■■□□□ 1.29
VPS28-206ENST00000526734 LRFN2Q9ULH4 789 aa23.09■■□□□ 1.29
VPS28-206ENST00000526734 TTC3P53804 2025 aa23.09■■□□□ 1.29
VPS28-206ENST00000526734 LYPLA2O95372 231 aa23.08■■□□□ 1.29
VPS28-206ENST00000526734 RB1P06400 928 aa23.08■■□□□ 1.29
VPS28-206ENST00000526734 DARSP14868 501 aaKnown RBP23.08■■□□□ 1.29
VPS28-206ENST00000526734 BTG3Q14201 252 aaPredicted RBP23.08■■□□□ 1.29
VPS28-206ENST00000526734 PTPROQ16827 1216 aa23.08■■□□□ 1.29
VPS28-206ENST00000526734 EPC2Q52LR7 807 aa23.08■■□□□ 1.29
VPS28-206ENST00000526734 NOSTRINQ8IVI9 506 aa23.08■■□□□ 1.29
VPS28-206ENST00000526734 TMEM192Q8IY95 271 aa23.08■■□□□ 1.29
VPS28-206ENST00000526734 ATXN2LQ8WWM7 1075 aaKnown RBP23.08■■□□□ 1.29
VPS28-206ENST00000526734 PPP1R16BQ96T49 567 aa23.08■■□□□ 1.29
VPS28-206ENST00000526734 ADAM2Q99965 735 aa23.08■■□□□ 1.29
VPS28-206ENST00000526734 GCOM2Q9BZD3 368 aaPredicted RBP23.08■■□□□ 1.29
VPS28-206ENST00000526734 INO80BQ9C086 356 aaPredicted RBP23.08■■□□□ 1.29
VPS28-206ENST00000526734 NOL7Q9UMY1 257 aaKnown RBP23.08■■□□□ 1.29
VPS28-206ENST00000526734 COL4A4P53420 1690 aaPredicted RBP23.07■■□□□ 1.28
VPS28-206ENST00000526734 YWHABP31946 246 aaKnown RBP23.07■■□□□ 1.28
VPS28-206ENST00000526734 CCDC85BQ15834 202 aaPredicted RBP23.07■■□□□ 1.28
VPS28-206ENST00000526734 MICALL1Q8N3F8 863 aa23.07■■□□□ 1.28
VPS28-206ENST00000526734 NLRP7Q8WX94 980 aa23.07■■□□□ 1.28
VPS28-206ENST00000526734 CLP1Q92989 425 aaKnown RBP23.07■■□□□ 1.28
VPS28-206ENST00000526734 DYDC2Q96IM9 177 aa23.07■■□□□ 1.28
VPS28-206ENST00000526734 CEP170P1Q96L14 293 aa23.07■■□□□ 1.28
VPS28-206ENST00000526734 ELAC1Q9H777 363 aaKnown RBP23.07■■□□□ 1.28
VPS28-206ENST00000526734 EVPLQ92817 2033 aa23.07■■□□□ 1.28
VPS28-206ENST00000526734 TMEM150BA6NC51 233 aa23.06■■□□□ 1.28
VPS28-206ENST00000526734 C9IYK1 514 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms