RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 FAM187AA6NFU0 413 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 UBE2Q2LH0YL09 131 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 NCK2O43639 380 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 UBOX5O94941 541 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 SERPING1P05155 500 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 T-ENOLP0DO92 83 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 VWA3BQ502W6 1294 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 RHBDF2Q6PJF5 856 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 LCA5Q86VQ0 697 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 SMYD1Q8NB12 490 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 RBBP8NLQ8NC74 664 aaPredicted RBP9.09□□□□□ -0.95
CSMD1-213ENST00000523488 ZNF398Q8TD17 642 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 ANKS1AQ92625 1134 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 IL1RAPL1Q9NZN1 696 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 KIAA1522Q9P206 1035 aaPredicted RBP9.09□□□□□ -0.95
CSMD1-213ENST00000523488 PCYOX1Q9UHG3 505 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 C2CD2Q9Y426 696 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 COL4A1P02462 1669 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 TLDC2A0PJX2 215 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 CREB3O43889 395 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 PLEKP08567 350 aaPredicted RBP9.09□□□□□ -0.95
CSMD1-213ENST00000523488 ATF3P18847 181 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 MTIF2P46199 727 aaKnown RBP9.09□□□□□ -0.95
CSMD1-213ENST00000523488 PPATQ06203 517 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 USP4Q13107 963 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 TYW1BQ6NUM6 668 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 VSTM1Q6UX27 236 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 MAEAQ7L5Y9 396 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 LRRC34Q8IZ02 419 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 SPICE1Q8N0Z3 855 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 SLC30A5Q8TAD4 765 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 SMC6Q96SB8 1091 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 BUD13Q9BRD0 619 aaKnown RBP eCLIP9.09□□□□□ -0.95
CSMD1-213ENST00000523488 MMADHCQ9H3L0 296 aaPredicted RBP9.09□□□□□ -0.95
CSMD1-213ENST00000523488 SLC52A2Q9HAB3 445 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 CABP5Q9NP86 173 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 LRCH1Q9Y2L9 728 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 PRAMEF22A3QJZ6 481 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 WDR46O15213 610 aaKnown RBP9.09□□□□□ -0.95
CSMD1-213ENST00000523488 DDX3YO15523 660 aaKnown RBP9.09□□□□□ -0.95
CSMD1-213ENST00000523488 MAFGO15525 162 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 PDE6CP51160 858 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 JAM2P57087 298 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 KRT26Q7Z3Y9 468 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 GPIHBP1Q8IV16 184 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 RNF25Q96BH1 459 aaPredicted RBP9.09□□□□□ -0.95
CSMD1-213ENST00000523488 MS4A14Q96JA4 679 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 STARD13Q9Y3M8 1113 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 SPATA31A5Q5VU36 1347 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 SPATA31A6Q5VVP1 1343 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 SPATA31A7Q8IWB4 1347 aa9.09□□□□□ -0.95
CSMD1-213ENST00000523488 PCCAP05165 728 aaPredicted RBP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 CTNNA2P26232 953 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 TSNAXIP1Q2TAA8 658 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 DHRS4L2Q6PKH6 230 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 HOOK3Q86VS8 718 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 FITM2Q8N6M3 262 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 AK8Q96MA6 479 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 IGF2BP3O00425 579 aaKnown RBP eCLIP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 HGSO14964 777 aaPredicted RBP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 NKRFO15226 690 aaKnown RBP eCLIP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 BUB1O43683 1085 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 CYP1A1P04798 512 aaPredicted RBP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 PABPC4LP0CB38 370 aaKnown RBP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 CHN1P15882 459 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 EIF4A3P38919 411 aaKnown RBP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 KLK7P49862 253 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 EVA1CP58658 441 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 NR5A1Q13285 461 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 TCIRG1Q13488 830 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 MTFR1Q15390 333 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 USH1GQ495M9 461 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 ZNF790Q6PG37 636 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 CCDC84Q86UT8 332 aaPredicted RBP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 CRAMP1Q96RY5 1269 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 ECT2Q9H8V3 914 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 PIDD1Q9HB75 910 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 LUC7LQ9NQ29 371 aaKnown RBP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 ZSWIM5Q9P217 1185 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 PDP2Q9P2J9 529 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 ARL2BPQ9Y2Y0 163 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 CTDP1Q9Y5B0 961 aaPredicted RBP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 COMMD3-BMI1R4GMX3 469 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 ZNF862O60290 1169 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 MYL6BP14649 208 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 KRT2P35908 639 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 DHX34Q14147 1143 aaKnown RBP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 MAN2A1Q16706 1144 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 TDRD12Q587J7 1177 aaKnown RBP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 ZNF530Q6P9A1 599 aaPredicted RBP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 C2CD5Q86YS7 1000 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 MYL10Q9BUA6 226 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 SEMA6BQ9H3T3 888 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 GDAQ9Y2T3 454 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 SLC12A7Q9Y666 1083 aa9.08□□□□□ -0.96
CSMD1-213ENST00000523488 DYNC1LI1Q9Y6G9 523 aaKnown RBP9.08□□□□□ -0.96
CSMD1-213ENST00000523488 ZNF646O15015 1829 aaPredicted RBP9.07□□□□□ -0.96
CSMD1-213ENST00000523488 SMIM23A6NLE4 172 aa9.07□□□□□ -0.96
CSMD1-213ENST00000523488 BIRC5O15392 142 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 239.4 ms