RNA–Protein interactions for RNA: ENST00000521037.1

VPS13B-208, Transcript of vacuolar protein sorting 13 homolog B, human

TSL 5

Gene VPS13B, Length 486 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13B-208	ENST00000521037	SAMM50	Q9Y512	469 aa		4.94	□□□□□ -1.62
VPS13B-208	ENST00000521037	USP24	Q9UPU5	2620 aa		4.94	□□□□□ -1.62
VPS13B-208	ENST00000521037		A0A0G2JMZ2	1700 aa		4.94	□□□□□ -1.62
VPS13B-208	ENST00000521037	PLXNA1	Q9UIW2	1896 aa		4.94	□□□□□ -1.62
VPS13B-208	ENST00000521037	FRY	Q5TBA9	3013 aa		4.94	□□□□□ -1.62
VPS13B-208	ENST00000521037	LOC285556	D6RIA3	1793 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	RFX7	Q2KHR2	1363 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	MED19	A0JLT2	244 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	RFXAP	O00287	272 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	DNM1L	O00429	736 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	GFRA2	O00451	464 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	LPXN	O60711	386 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	FBXO24	O75426	580 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	CYP2B6	P20813	491 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	ERCC5	P28715	1186 aa	Predicted RBP	4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	GSTT1	P30711	240 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	CRK	P46108	304 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	HK2	P52789	917 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	TLE2	Q04725	743 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	TNFAIP1	Q13829	316 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	RRP1B	Q14684	758 aa	Known RBP	4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	TMEM240	Q5SV17	173 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	FKBP1C	Q5VVH2	108 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	PRAMEF13	Q5VWM6	474 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	HID1	Q8IV36	788 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	ELMO3	Q96BJ8	720 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	BACH2	Q9BYV9	841 aa		4.93	□□□□□ -1.62
VPS13B-208	ENST00000521037	WDFY3	Q8IZQ1	3526 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	TREH	O43280	583 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	MYO1B	O43795	1136 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	TAF5L	O75529	589 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	WDHD1	O75717	1129 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	P4HB	P07237	508 aa	Known RBP	4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	CSF1R	P07333	972 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	CELA3A	P09093	270 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	ZGLP1	P0C6A0	271 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	MYOG	P15173	224 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	BMP7	P18075	431 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	CHRND	Q07001	517 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	NR0B2	Q15466	257 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	PCNX4	Q63HM2	1172 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	ZNF746	Q6NUN9	644 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	CDH24	Q86UP0	819 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	IRF2BP1	Q8IU81	584 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	FAM178B	Q8IXR5	827 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	RTF1	Q92541	710 aa	Known RBP	4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	LPAR1	Q92633	364 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	COA7	Q96BR5	231 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	ZNF341	Q9BYN7	854 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	PORCN	Q9H237	461 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	ZNF552	Q9H707	407 aa	Predicted RBP	4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	EBF1	Q9UH73	591 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	TTF2	Q9UNY4	1162 aa	Known RBP	4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	AGTPBP1	Q9UPW5	1226 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	ATP11B	Q9Y2G3	1177 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	GBF1	Q92538	1859 aa		4.92	□□□□□ -1.62
VPS13B-208	ENST00000521037	CACNA1G	O43497	2377 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	PRRC2B	Q5JSZ5	2229 aa	Known RBP	4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	PPAN-P2RY11	A0A0B4J1V8	794 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	PNMA6F	A0A0J9YX94	578 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	PRAMEF27	A3QJZ7	478 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	SMARCA5	O60264	1052 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	TRIM13	O60858	407 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	CNMD	O75829	334 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	CYBA	P13498	195 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	HDLBP	Q00341	1268 aa	Known RBP	4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	CC2D1B	Q5T0F9	858 aa	Known RBP	4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	GJC2	Q5T442	439 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	ASCL5	Q7RTU5	278 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	ERMP1	Q7Z2K6	904 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	HDX	Q7Z353	690 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	PDZD8	Q8NEN9	1154 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	DNAJB8	Q8NHS0	232 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	GADD45GIP1	Q8TAE8	222 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	HERVK_113	Q902F9	699 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	ZDHHC15	Q96MV8	337 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	SRCIN1	Q9C0H9	1055 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	NKX2-4	Q9H2Z4	354 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	PHAX	Q9H814	394 aa	Known RBP	4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	METTL5	Q9NRN9	209 aa	Known RBP	4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	RBPJL	Q9UBG7	517 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	DBF4	Q9UBU7	674 aa	Predicted RBP	4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	DDX20	Q9UHI6	824 aa	Known RBP	4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	TBX21	Q9UL17	535 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	KNSTRN	Q9Y448	316 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	ZHX2	Q9Y6X8	837 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	NBEA	Q8NFP9	2946 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	GAK	O14976	1311 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	ASH1L	Q9NR48	2969 aa	Known RBP	4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	GVINP1	Q7Z2Y8	2422 aa		4.91	□□□□□ -1.62
VPS13B-208	ENST00000521037	ATRX	P46100	2492 aa		4.9	□□□□□ -1.62
VPS13B-208	ENST00000521037	TEX51	A0A1B0GUA7	166 aa		4.9	□□□□□ -1.63
VPS13B-208	ENST00000521037	CHL1	O00533	1208 aa		4.9	□□□□□ -1.63
VPS13B-208	ENST00000521037	SEMA7A	O75326	666 aa		4.9	□□□□□ -1.63
VPS13B-208	ENST00000521037	HSPA5	P11021	654 aa	Known RBP	4.9	□□□□□ -1.63
VPS13B-208	ENST00000521037	NFKB2	Q00653	900 aa		4.9	□□□□□ -1.63
VPS13B-208	ENST00000521037	RAD51AP2	Q09MP3	1159 aa		4.9	□□□□□ -1.63
VPS13B-208	ENST00000521037	NFE2L2	Q16236	605 aa		4.9	□□□□□ -1.63
VPS13B-208	ENST00000521037	MFSD14B	Q5SR56	506 aa		4.9	□□□□□ -1.63
VPS13B-208	ENST00000521037	SCYL3	Q8IZE3	742 aa		4.9	□□□□□ -1.63

Retrieved 100 of 20,778 RNA–protein pairs in 15.1 ms