RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 FKBP1AP62942 108 aaKnown RBP11.05□□□□□ -0.64
MCF2-209ENST00000520602 MAP2K1Q02750 393 aaPredicted RBP11.05□□□□□ -0.64
MCF2-209ENST00000520602 ANGEL2Q5VTE6 544 aaKnown RBP11.05□□□□□ -0.64
MCF2-209ENST00000520602 SWSAP1Q6NVH7 229 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 DPH6Q7L8W6 267 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 SULF1Q8IWU6 871 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 UBLCP1Q8WVY7 318 aaPredicted RBP11.05□□□□□ -0.64
MCF2-209ENST00000520602 SAAL1Q96ER3 474 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 PNKPQ96T60 521 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 AP1M1Q9BXS5 423 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 TBC1D22BQ9NU19 505 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 GABBR1Q9UBS5 961 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 SNX12Q9UMY4 172 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 SHANK3Q9BYB0 1731 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 A0A087X0T9 212 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 TLDC2A0PJX2 215 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 HEXIM1O94992 359 aaKnown RBP11.05□□□□□ -0.64
MCF2-209ENST00000520602 FAM228BP0C875 321 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 R3HDM1Q15032 1099 aaKnown RBP11.05□□□□□ -0.64
MCF2-209ENST00000520602 HAUS6Q7Z4H7 955 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 CCDC26Q8TAB7 109 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 FAM76AQ8TAV0 307 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 COG1Q8WTW3 980 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 KIFAP3Q92845 792 aa11.05□□□□□ -0.64
MCF2-209ENST00000520602 ESYT3A0FGR9 886 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 GOLGA6CA6NDK9 693 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 SLITRK3O94933 977 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 GOLGA6DP0CG33 693 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 KLRC1P26715 233 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 YWHABP31946 246 aaKnown RBP11.04□□□□□ -0.64
MCF2-209ENST00000520602 JAG1P78504 1218 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 PTK2Q05397 1052 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 PAK2Q13177 524 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 MESDQ14696 234 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 SLC18A3Q16572 532 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 NBPF12Q5TAG4 269 aaPredicted RBP11.04□□□□□ -0.64
MCF2-209ENST00000520602 ZNF746Q6NUN9 644 aaPredicted RBP11.04□□□□□ -0.64
MCF2-209ENST00000520602 LRRC55Q6ZSA7 311 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 CCDC50Q8IVM0 306 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 AFAP1L1Q8TED9 768 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 MPHOSPH6Q99547 160 aaKnown RBP11.04□□□□□ -0.64
MCF2-209ENST00000520602 AZI2Q9H6S1 392 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 GOLGA6AQ9NYA3 693 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 HACL1Q9UJ83 578 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 LMNB1P20700 586 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 CETN2P41208 172 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 SLC12A3P55017 1021 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 COG2Q14746 738 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 TERF2Q15554 542 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 FIGNQ5HY92 759 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 OTOP1Q7RTM1 612 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 PHLDB2Q86SQ0 1253 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 CCDC25Q86WR0 208 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 XXYLT1Q8NBI6 393 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 LPAR1Q92633 364 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 DPH5Q9H2P9 285 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 SEL1LQ9UBV2 794 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 GINS2Q9Y248 185 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 GSTTP1A0A1W2PQM5 241 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 SSU72P8A0A1W2PR75 194 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 RCCD1A6NED2 376 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 VIL1P09327 827 aaKnown RBP11.04□□□□□ -0.64
MCF2-209ENST00000520602 SUPT20HL1Q3ZLR7 823 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 TRIM59Q8IWR1 403 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 SPATA4Q8NEY3 305 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 TSPYL1Q9H0U9 437 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 GPRC5CQ9NQ84 441 aa11.04□□□□□ -0.64
MCF2-209ENST00000520602 DENND3A2RUS2 1198 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 TMEM150BA6NC51 233 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 N4BP1O75113 896 aaKnown RBP11.03□□□□□ -0.64
MCF2-209ENST00000520602 ICAM1P05362 532 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 RRP1BQ14684 758 aaKnown RBP11.03□□□□□ -0.64
MCF2-209ENST00000520602 NSUN6Q8TEA1 469 aaKnown RBP11.03□□□□□ -0.64
MCF2-209ENST00000520602 LRRC1Q9BTT6 524 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 IKZF4Q9H2S9 585 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 EMSYQ7Z589 1322 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 HPDP32754 393 aaPredicted RBP11.03□□□□□ -0.64
MCF2-209ENST00000520602 PSMC5P62195 406 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 DMTNQ08495 405 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 ETNPPLQ8TBG4 499 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 DCPSQ96C86 337 aaKnown RBP11.03□□□□□ -0.64
MCF2-209ENST00000520602 INTS2Q9H0H0 1204 aaKnown RBP11.03□□□□□ -0.64
MCF2-209ENST00000520602 PNMA2Q9UL42 364 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 SIK3Q9Y2K2 1263 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 REXO2Q9Y3B8 237 aaKnown RBP11.03□□□□□ -0.64
MCF2-209ENST00000520602 LTBP4Q8N2S1 1624 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 NR3C2P08235 984 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 SPATA31C1P0DKV0 1188 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 VAMP7P51809 220 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 ARSHQ5FYA8 562 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 SEL1L2Q5TEA6 688 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 KLHDC7AQ5VTJ3 777 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 INTS8Q75QN2 995 aaKnown RBP11.03□□□□□ -0.64
MCF2-209ENST00000520602 CYFIP1Q7L576 1253 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 RNF10Q8N5U6 811 aaKnown RBP11.03□□□□□ -0.64
MCF2-209ENST00000520602 UBL4BQ8N7F7 174 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 RIT2Q99578 217 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 WDR18Q9BV38 432 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 KIFC3Q9BVG8 833 aa11.03□□□□□ -0.64
MCF2-209ENST00000520602 PLVAPQ9BX97 442 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms