RNA–Protein interactions for RNA: ENST00000515460.5

NUP54-218, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 849 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-218ENST00000515460 PIGBQ92521 554 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 ALG3Q92685 438 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 TRIM44Q96DX7 344 aaPredicted RBP6.78□□□□□ -1.32
NUP54-218ENST00000515460 APBA2Q99767 749 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 BDH2Q9BUT1 245 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 RWDD3Q9Y3V2 267 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 BACE2Q9Y5Z0 518 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 INSRP06213 1382 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 CACNA1BQ00975 2339 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 TOGARAM1Q9Y4F4 1720 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 MUC6Q6W4X9 2439 aa6.78□□□□□ -1.32
NUP54-218ENST00000515460 PAPPA2Q9BXP8 1791 aa6.77□□□□□ -1.33
NUP54-218ENST00000515460 PRICKLE3O43900 615 aaPredicted RBP6.77□□□□□ -1.33
NUP54-218ENST00000515460 ASGR2P07307 311 aa6.77□□□□□ -1.33
NUP54-218ENST00000515460 NCAM1P13591 858 aa6.77□□□□□ -1.33
NUP54-218ENST00000515460 RGS3P49796 1198 aa6.77□□□□□ -1.33
NUP54-218ENST00000515460 FAM193AP78312 1265 aa6.77□□□□□ -1.33
NUP54-218ENST00000515460 VWA3BQ502W6 1294 aa6.77□□□□□ -1.33
NUP54-218ENST00000515460 DBX2Q6ZNG2 339 aa6.77□□□□□ -1.33
NUP54-218ENST00000515460 FAM169BQ8N8A8 192 aa6.77□□□□□ -1.33
NUP54-218ENST00000515460 PSMD1Q99460 953 aa6.77□□□□□ -1.33
NUP54-218ENST00000515460 SPATA25Q9BR10 227 aa6.77□□□□□ -1.33
NUP54-218ENST00000515460 USP40Q9NVE5 1235 aa6.77□□□□□ -1.33
NUP54-218ENST00000515460 MTMR10Q9NXD2 777 aa6.77□□□□□ -1.33
NUP54-218ENST00000515460 AKT3Q9Y243 479 aa6.77□□□□□ -1.33
NUP54-218ENST00000515460 RTL1A6NKG5 1358 aa6.77□□□□□ -1.33
NUP54-218ENST00000515460 C2orf71A6NGG8 1288 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 KRT37O76014 449 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 GLI4P10075 376 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 TNNT2P45379 298 aaPredicted RBP6.76□□□□□ -1.33
NUP54-218ENST00000515460 IRX6P78412 446 aaPredicted RBP6.76□□□□□ -1.33
NUP54-218ENST00000515460 RTP5Q14D33 572 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 NT5DC1Q5TFE4 455 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 MTERF4Q7Z6M4 381 aaKnown RBP6.76□□□□□ -1.33
NUP54-218ENST00000515460 CABP7Q86V35 215 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 CPNE8Q86YQ8 564 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 LZTR1Q8N653 840 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 PNNQ9H307 717 aaKnown RBP6.76□□□□□ -1.33
NUP54-218ENST00000515460 PRO3102Q9H379 93 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 RNF186Q9NXI6 227 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 FBLN5Q9UBX5 448 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 ASAP1Q9ULH1 1129 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 LAS1LQ9Y4W2 734 aaKnown RBP6.76□□□□□ -1.33
NUP54-218ENST00000515460 PALLDQ8WX93 1383 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 PCDH11XQ9BZA7 1347 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 PCDH11YQ9BZA8 1340 aa6.76□□□□□ -1.33
NUP54-218ENST00000515460 ZFHX4Q86UP3 3567 aa6.75□□□□□ -1.33
NUP54-218ENST00000515460 C5P01031 1676 aa6.75□□□□□ -1.33
NUP54-218ENST00000515460 FLT4P35916 1363 aa6.75□□□□□ -1.33
NUP54-218ENST00000515460 NOP56O00567 594 aaKnown RBP6.75□□□□□ -1.33
NUP54-218ENST00000515460 KRTAP10-2P60368 255 aa6.75□□□□□ -1.33
NUP54-218ENST00000515460 CAP1Q01518 475 aa6.75□□□□□ -1.33
NUP54-218ENST00000515460 ITPK1Q13572 414 aa6.75□□□□□ -1.33
NUP54-218ENST00000515460 UBXN11Q5T124 520 aa6.75□□□□□ -1.33
NUP54-218ENST00000515460 LIPIQ6XZB0 460 aa6.75□□□□□ -1.33
NUP54-218ENST00000515460 FERMT3Q86UX7 667 aa6.75□□□□□ -1.33
NUP54-218ENST00000515460 USP33Q8TEY7 942 aa6.75□□□□□ -1.33
NUP54-218ENST00000515460 P2RX7Q99572 595 aaKnown RBP6.75□□□□□ -1.33
NUP54-218ENST00000515460 RNF38Q9H0F5 515 aa6.75□□□□□ -1.33
NUP54-218ENST00000515460 ACTR10Q9NZ32 417 aa6.75□□□□□ -1.33
NUP54-218ENST00000515460 GULP1Q9UBP9 304 aa6.75□□□□□ -1.33
NUP54-218ENST00000515460 POLKQ9UBT6 870 aa6.75□□□□□ -1.33
NUP54-218ENST00000515460 SCN11AQ9UI33 1791 aa6.74□□□□□ -1.33
NUP54-218ENST00000515460 FAM208AQ9UK61 1670 aaKnown RBP6.74□□□□□ -1.33
NUP54-218ENST00000515460 KIF24Q5T7B8 1368 aa6.74□□□□□ -1.33
NUP54-218ENST00000515460 PPP1R11O60927 126 aaPredicted RBP6.74□□□□□ -1.33
NUP54-218ENST00000515460 PHKG2P15735 406 aa6.74□□□□□ -1.33
NUP54-218ENST00000515460 PAMP19021 973 aa6.74□□□□□ -1.33
NUP54-218ENST00000515460 HMGB2P26583 209 aaKnown RBP6.74□□□□□ -1.33
NUP54-218ENST00000515460 PMLP29590 882 aa6.74□□□□□ -1.33
NUP54-218ENST00000515460 NFKB2Q00653 900 aa6.74□□□□□ -1.33
NUP54-218ENST00000515460 SAPCD2Q86UD0 394 aa6.74□□□□□ -1.33
NUP54-218ENST00000515460 GGNQ86UU5 652 aa6.74□□□□□ -1.33
NUP54-218ENST00000515460 BVESQ8NE79 360 aa6.74□□□□□ -1.33
NUP54-218ENST00000515460 BUD13Q9BRD0 619 aaKnown RBP eCLIP6.74□□□□□ -1.33
NUP54-218ENST00000515460 ADAMTSL1Q8N6G6 1762 aa6.74□□□□□ -1.33
NUP54-218ENST00000515460 SMG6Q86US8 1419 aaKnown RBP6.74□□□□□ -1.33
NUP54-218ENST00000515460 LTN1O94822 1766 aa6.73□□□□□ -1.33
NUP54-218ENST00000515460 NPHP3-ACAD11A0A0J9YXS1 232 aa6.73□□□□□ -1.33
NUP54-218ENST00000515460 IQCA1LA6NCM1 817 aa6.73□□□□□ -1.33
NUP54-218ENST00000515460 GOLGA6L3A6NEY3 463 aa6.73□□□□□ -1.33
NUP54-218ENST00000515460 SMAD7O15105 426 aaKnown RBP6.73□□□□□ -1.33
NUP54-218ENST00000515460 IGSF3O75054 1194 aa6.73□□□□□ -1.33
NUP54-218ENST00000515460 KIF20AO95235 890 aa6.73□□□□□ -1.33
NUP54-218ENST00000515460 KCNH1O95259 989 aa6.73□□□□□ -1.33
NUP54-218ENST00000515460 SLC20A2Q08357 652 aa6.73□□□□□ -1.33
NUP54-218ENST00000515460 PKN2Q16513 984 aaKnown RBP6.73□□□□□ -1.33
NUP54-218ENST00000515460 IFNL2Q8IZJ0 200 aa6.73□□□□□ -1.33
NUP54-218ENST00000515460 DDX1Q92499 740 aaKnown RBP6.73□□□□□ -1.33
NUP54-218ENST00000515460 PPP1R14AQ96A00 147 aa6.73□□□□□ -1.33
NUP54-218ENST00000515460 TMEM51Q9NW97 253 aa6.73□□□□□ -1.33
NUP54-218ENST00000515460 HDAC9Q9UKV0 1011 aa6.73□□□□□ -1.33
NUP54-218ENST00000515460 EMC9Q9Y3B6 208 aa6.73□□□□□ -1.33
NUP54-218ENST00000515460 MRVI1Q9Y6F6 885 aa6.73□□□□□ -1.33
NUP54-218ENST00000515460 ADRB1P08588 477 aa6.72□□□□□ -1.33
NUP54-218ENST00000515460 EPHX2P34913 555 aa6.72□□□□□ -1.33
NUP54-218ENST00000515460 EIF4A2Q14240 407 aaKnown RBP6.72□□□□□ -1.33
NUP54-218ENST00000515460 LARP1BQ659C4 914 aaKnown RBP6.72□□□□□ -1.33
NUP54-218ENST00000515460 B3GNT8Q7Z7M8 397 aa6.72□□□□□ -1.33
NUP54-218ENST00000515460 SMARCC2Q8TAQ2 1214 aa6.72□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms