RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 CASP4P49662 377 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 SNRPFP62306 86 aaKnown RBP16.23■□□□□ 0.19
NUP54-217ENST00000514987 MEI1Q5TIA1 1274 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 PCNX4Q63HM2 1172 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 MIER3Q7Z3K6 550 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 TAF4BQ92750 862 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 ZNF341Q9BYN7 854 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 TMEM206Q9H813 350 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 SIX2Q9NPC8 291 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 TBC1D22BQ9NU19 505 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 LARSQ9P2J5 1176 aaKnown RBP16.23■□□□□ 0.19
NUP54-217ENST00000514987 COL4A5P29400 1685 aa16.23■□□□□ 0.19
NUP54-217ENST00000514987 SFI1A8K8P3 1242 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 CLSTN1O94985 981 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 LYPLA2O95372 231 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 KLRC1P26715 233 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 TNNT3P45378 269 aaPredicted RBP16.22■□□□□ 0.19
NUP54-217ENST00000514987 UBXN2AP68543 259 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 CIAPIN1Q6FI81 312 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 ZNF571Q7Z3V5 609 aaPredicted RBP16.22■□□□□ 0.19
NUP54-217ENST00000514987 SLC17A8Q8NDX2 589 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 FIZ1Q96SL8 496 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 STRA6Q9BX79 667 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 MYOZ2Q9NPC6 264 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 AGPAT3Q9NRZ7 376 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 FBXO28Q9NVF7 368 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 NAGPAQ9UK23 515 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 UBIAD1Q9Y5Z9 338 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 ZNF536O15090 1300 aa16.22■□□□□ 0.19
NUP54-217ENST00000514987 PHF20L1A8MW92 1017 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 WNT10BO00744 389 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 RPS12P25398 132 aaKnown RBP16.21■□□□□ 0.19
NUP54-217ENST00000514987 INPP5BP32019 993 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 FMO5P49326 533 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 APBA1Q02410 837 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 CXCL9Q07325 125 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 ALKBH5Q6P6C2 394 aaKnown RBP16.21■□□□□ 0.19
NUP54-217ENST00000514987 SYCP3Q8IZU3 236 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 CLEC4DQ8WXI8 215 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 CCDC102AQ96A19 550 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 HOOK2Q96ED9 719 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 PBKQ96KB5 322 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 AGBL1Q96MI9 1066 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 IWS1Q96ST2 819 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 STK33Q9BYT3 514 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 ZCCHC17Q9NP64 241 aaKnown RBP16.21■□□□□ 0.19
NUP54-217ENST00000514987 KCNH7Q9NS40 1196 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 RNF216Q9NWF9 866 aaPredicted RBP16.21■□□□□ 0.19
NUP54-217ENST00000514987 ADAM21Q9UKJ8 722 aa16.21■□□□□ 0.19
NUP54-217ENST00000514987 LRRIQ3A6PVS8 624 aaPredicted RBP16.21■□□□□ 0.18
NUP54-217ENST00000514987 N4BP1O75113 896 aaKnown RBP16.21■□□□□ 0.18
NUP54-217ENST00000514987 HIP1RO75146 1068 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 PPP1R37O75864 691 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 ITGB5P18084 799 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 LMNB1P20700 586 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 NPEPPSP55786 919 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 KCNA1Q09470 495 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 TKFCQ3LXA3 575 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 ZC2HC1CQ53FD0 456 aaPredicted RBP16.21■□□□□ 0.18
NUP54-217ENST00000514987 C8orf74Q6P047 294 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 XRRA1Q6P2D8 792 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 PADI6Q6TGC4 694 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 C12orf56Q8IXR9 622 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 AENQ8WTP8 325 aaKnown RBP16.21■□□□□ 0.18
NUP54-217ENST00000514987 JDP2Q8WYK2 163 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 SUGCTQ9HAC7 445 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 SLC38A10Q9HBR0 1119 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 AGO4Q9HCK5 861 aaKnown RBP16.21■□□□□ 0.18
NUP54-217ENST00000514987 STIM2Q9P246 746 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 HPCAL4Q9UM19 191 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 NENFQ9UMX5 172 aa16.21■□□□□ 0.18
NUP54-217ENST00000514987 MYH11P35749 1972 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 P4HA2O15460 535 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 NCK2O43639 380 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 CTNND1O60716 968 aaKnown RBP16.2■□□□□ 0.18
NUP54-217ENST00000514987 H2AFZP0C0S5 128 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 KRT13P13646 458 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 SOX5P35711 763 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 QARSP47897 775 aaKnown RBP16.2■□□□□ 0.18
NUP54-217ENST00000514987 EPHB4P54760 987 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 ZNF280AP59817 542 aaPredicted RBP16.2■□□□□ 0.18
NUP54-217ENST00000514987 TGFB2P61812 414 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 CETN1Q12798 172 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 RASA3Q14644 834 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 RPS6KA1Q15418 735 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 EMBQ6PCB8 327 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 SAMD1Q6SPF0 538 aaPredicted RBP16.2■□□□□ 0.18
NUP54-217ENST00000514987 H2AFVQ71UI9 128 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 IFT20Q8IY31 132 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 SYCE1Q8N0S2 351 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 GOLGA6L1Q8N7Z2 621 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 CALR3Q96L12 384 aaKnown RBP16.2■□□□□ 0.18
NUP54-217ENST00000514987 ACCSQ96QU6 501 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 LRRC1Q9BTT6 524 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 SELENOOQ9BVL4 669 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 GLIS2Q9BZE0 524 aaPredicted RBP16.2■□□□□ 0.18
NUP54-217ENST00000514987 PIM2Q9P1W9 311 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 VPS18Q9P253 973 aa16.2■□□□□ 0.18
NUP54-217ENST00000514987 WRAP73Q9P2S5 460 aaPredicted RBP16.2■□□□□ 0.18
NUP54-217ENST00000514987 CTDP1Q9Y5B0 961 aaPredicted RBP16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms